Granulibacter bethesdensis CGDNIH1: GbCGDNIH1_1286
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Entry
GbCGDNIH1_1286 CDS
T00392
Name
(GenBank) Metal-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gbe
Granulibacter bethesdensis CGDNIH1
Pathway
gbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GbCGDNIH1_1286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbe03019
]
GbCGDNIH1_1286
Messenger RNA biogenesis [BR:
gbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GbCGDNIH1_1286
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ABI62184
UniProt:
Q0BSL8
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All DBs
Position
complement(1427679..1429337)
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AA seq
552 aa
AA seq
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MTDTHTEIAFLPLGGTGEIGMNLNLYRSRSPAGEHWLAIDCGIGFGGTELPEVDVMMADP
SFIAERRDRLTGLVITHAHEDHIGAVAWLWPQLRCPVYASPFAAMVLRRKLSEAQLQNEV
RILPLPLGGALSIGPFSLRTFRMAHSTPESLAIAIDTPHGAILHTGDWKLDPDPLVGPPT
DEEGLRALGDEGVLAIVCDSTNAMVEGHSGSESDVRRGLRDAIAGLSGRVAVTCFASNVA
RVESIAMAAEEAGRSVALVGRSLRNLNTAARDCGYLRDVQQFLSEDDALSVPDDNLLMIV
TGSQGEPRSALARIAADTHPNIALGEGDTVVFSSRVIPGNERAVNTVQDNLVRRGVHLIT
DSEATVHVSGHPAREELRRLYQLVRPRYSVPVHGEWRHLAAQADLAAEMQAEPVMLEDGD
ILSFGSGRPEIVDSAPVGRLVLDGGRLLPLNGGVLSARRRMLYNGVVLASIAVDEDGHLM
GRPKLSAPGLFDSQEAEAARVINEFAASMDSLPASLRHDDALLTEAARSALRRALGRKLQ
KRPLVDVHLLRI
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacacatacggagattgctttcctgcccctgggggggacgggcgagatcggc
atgaacctgaatctttaccggtcgcgcagcccggcgggtgagcattggctggcgattgac
tgcggcatcggctttggcggcacggagctgccggaagtcgatgtgatgatggccgatccc
tctttcattgcggagcggcgggatcggctgaccgggctggtgatcacgcatgcgcatgag
gaccatatcggtgcggtggcatggttgtggcctcaactacgctgccctgtctatgcatcc
ccgtttgccgcgatggtgctgaggcgcaagctgtccgaagcgcaattacagaatgaagtg
agaattcttcctctgcccctcggcggagcgctgagcatcgggccgttctccctgcgtaca
ttccgcatggcgcattccacaccggaatctctggcgattgccatcgacacgccgcatggc
gcgatcctgcataccggtgactggaaactcgatcccgatcctctggtcggtccgccgacc
gatgaggaagggttgcgcgcgctgggggatgaaggcgtgctggcgatcgtctgcgattcc
accaatgcaatggtggagggacatagcggctccgaatccgatgtgcgccgtggcttgcga
gatgcgattgccggtttgagcggccgtgtggcggtgacctgttttgccagcaatgtcgcg
cgggtggaaagcatcgccatggcggcagaggaagccggacgcagcgtggcgctggtgggc
cgttctctgcgcaatctgaatacggcggcccgtgactgcggttatctgcgggatgtgcag
cagttcctgtccgaggatgatgcgctgtcggtgcccgatgataatctgctgatgatcgtt
acaggtagccagggtgaacctcgttctgcactggcccggattgccgcggatacgcatccc
aatattgcccttggggaaggggatacggtggtgttttccagccgtgtcattcccggtaat
gagcgggcagtgaataccgttcaggataatctggtgcgccgtggcgtgcatctgatcact
gattccgaagcaaccgtgcatgtctccggccatccggcgcgggaggaattgcggcgtctc
tatcagttggtacgcccgcgttactctgtcccggtgcatggcgaatggcgtcatctggcg
gcgcaggctgatctggcagcggaaatgcaggccgaaccggtgatgctggaagatggcgat
attctcagcttcggctccgggcgtcctgaaatcgtggacagtgctccggtaggtcgtctg
gtgctggatggcggcaggcttttgccactcaatggtggcgtgctctcggcacggcggcgg
atgctttataatggcgtggtgctggcgagtattgcggtcgatgaggatggccatctgatg
ggccgtcccaagctcagcgcaccggggctgttcgattcgcaggaagcggaagcggccagg
gtgatcaacgagtttgcggcctctatggatagtctgccggcttccctgcggcatgacgat
gcattgctgacggaggccgcccgtagtgccttgcgtcgcgctctgggacgcaaattgcaa
aagcgtccgctggtagacgtacatctgctgcgtatctga
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