Granulibacter bethesdensis CGDNIH1: GbCGDNIH1_2284
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Entry
GbCGDNIH1_2284 CDS
T00392
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gbe
Granulibacter bethesdensis CGDNIH1
Pathway
gbe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gbe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GbCGDNIH1_2284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbe03021
]
GbCGDNIH1_2284
Transcription machinery [BR:
gbe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GbCGDNIH1_2284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
RRM_ESF1
Fib_alpha
Motif
Other DBs
NCBI-ProteinID:
ABI63182
UniProt:
Q0BPS0
LinkDB
All DBs
Position
complement(2530591..2532555)
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AA seq
654 aa
AA seq
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MATKQAATAESASSEQDVETTLLDTQSASVKRLIARGKERGYITFDELNAVLPSEQNSSE
QIEDVMANLSEMGIQVVESEETEESGEPAARAERAEETEDEERSGNVDEESLGRTDDPVR
MYLREMGSVELLSREGEIAIAKRIEAGRDMMIGGLCESPLTFRAIITWHERLKAGEMLLR
DIIDLEATQGGPPPGVVEGGEEGAEEGEADAEAFTPPPPPEESEDGDDADGIGMSLSALE
EKLKPETLQRFEEIEAIYKKLSKMQSKRLDSFTSGEEVTARSEKTYEKMRDELVAKVSEV
RLHNGRVEELVLQLKQLNQRLTGLEGQLLRLAESCKVPRDSFLEQHRNHELEPNWLERVS
TLPGKAWKNFSARYPQEVGQIRGRIGEVAADAGLPIPEFLRVYKTVNRGERDSARAKKEM
IEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI
TRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPQPEELAEKLGMPLEKVRKVLK
IAKEPISLETPIGDEEDSHLGDFIEDKAAIIPLDAAIQANLREATTRVLSSLTPREERVL
RMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDD
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaagcaggctgctaccgcggagagcgcgtcgtcggaacaggatgtggaaacc
accctgctcgacacccagtccgcatcggtgaaacgcctgatcgcgcgtggcaaggagcgg
gggtacatcacctttgacgagctgaacgcggttctgccgtcggagcagaacagctccgaa
cagatcgaggacgtgatggccaatctcagcgagatgggcattcaggtcgtcgagagtgaa
gagaccgaggaaagcggcgaacccgctgcccgcgcagaacgggcggaagaaaccgaggat
gaggaacgctccggcaatgtggacgaggaaagcctcggccgcacggatgaccccgtccgc
atgtatctgcgcgagatgggcagcgtggagctgctgtcgcgcgagggcgaaatcgccatc
gccaagcgtatcgaggctggtcgcgacatgatgatcggcgggctgtgcgaaagcccgctg
acattccgcgccatcatcacctggcatgaacgtctcaaggccggtgagatgctgctgcgt
gacatcatcgatctggaagccacgcagggcggtccgccgcccggtgtggtggagggtggt
gaagaaggtgccgaggaaggcgaggcagatgccgaagccttcactccgccgcccccgcct
gaagaatccgaggatggagacgatgccgacggtatcggtatgtctctctccgcgcttgag
gaaaagctgaagccggagaccctgcaacggttcgaggaaatcgaggcgatctacaaaaaa
ctgtccaagatgcagtcaaagcgtctcgacagctttacctccggcgaggaagtcaccgcg
cgctcggaaaaaacctatgaaaagatgcgtgatgaactggtcgcgaaggtcagcgaggtg
cggctgcataatggacgcgtggaggaactggttcttcagctcaagcagctcaaccagcgt
ctgaccggactggaagggcaactgctgcgtctggcggaaagctgtaaggtgccgcgtgat
tccttcctggaacagcaccgtaatcatgagctggagccgaactggctggagcgtgtctct
accctgcccggcaaggcatggaagaatttttcggcccgctacccgcaggaagtcggccag
atccggggccggatcggagaggttgcggcggatgccggactgccgatccccgaattcctg
cgtgtttacaagaccgtcaatcgcggcgaacgcgatagcgcccgcgccaagaaggagatg
atcgaggccaatctgcgtctggtgatctctattgccaagaaatacaccaatcgcggtttg
cagttccttgacctgattcaggaaggcaatatcggcctgatgaaggcggtggacaaattc
gaatatcgccgcggctacaagttcagcacctatgcaacctggtggattcgtcaggcgatc
acgcgttccatcgccgatcaggcccgcaccatccgcattccggtgcatatgatcgagacg
atcaacaagctggtgcgtaccagccgccagatgctgcatgaaatcgggcgtgaaccgcag
ccggaggaactggccgaaaagctcggcatgccgctggaaaaagtgcggaaagttctgaag
atcgccaaggaaccgatcagccttgaaaccccgatcggtgacgaggaagacagccatctg
ggcgatttcatcgaggacaaggcggcgatcattccactggatgccgccattcaggccaat
ctgcgtgaagcaaccacccgcgttctgtccagcctgaccccgcgtgaggaacgtgtgctg
cgcatgcgcttcgggattggcatgaatacggatcacacgttggaagaagtgggccagcag
ttcaacgtgacgcgtgaacgcatccgtcagatcgaggccaaggcgctccgcaagctgaaa
caccccagccgcagccgtaagctgcgctcattcctggacgattga
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