Candidatus Giovannonibacteria bacterium NC_groundwater_467_Ag_B-0.1um_47_26: HYW15_00315
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Entry
HYW15_00315 CDS
T10159
Name
(GenBank) hypothetical protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gbg Candidatus Giovannonibacteria bacterium NC_groundwater_467_Ag_B-0.1um_47_26
Pathway
gbg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gbg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HYW15_00315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbg03400
]
HYW15_00315
Enzymes [BR:
gbg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HYW15_00315
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HYW15_00315
DNA repair and recombination proteins [BR:
gbg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HYW15_00315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QQG42660
UniProt:
A0A7T5REY7
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All DBs
Position
complement(42593..43414)
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AA seq
273 aa
AA seq
DB search
MPELPEVETTVRKLKPLIVGKRILNLSGKKILNIERKGKAILICLSGGKILGFHQRMSGK
LLIVPHGTRDKHIRRTFCLSGLPPHLSDRCGGGDLVFHDVRKFGVVWYGDSKKVLGDPYF
KTLGKDALEISLRDFRKLFKTKYITPLIPLTLRGTKIKSFLLNQKNLAGVGNIVADEVLW
RAKIHPEREVRSLSGLEVRNLWKSIKFILNRSIKSGGTTMRDWLHPEGTRGAYFEKRFIY
DREGEPCRRCRAGIIRKKISGRSGYFCPRCQKI
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattgccggaggtggaaacaacggtaagaaaactaaagccgcttattgtgggc
aagcggattttaaacttaagcggaaaaaagattttaaatatagagcgcaaaggcaaggcg
attttaatttgtctttcgggcggaaagattttggggtttcaccagcgaatgagcgggaag
cttttgattgtgcctcacggaacgcgcgataagcatattcgccgcaccttttgtctttcc
ggtttacccccacacctatccgataggtgtgggggcggggatttggtttttcacgacgtc
cgcaaattcggcgttgtttggtatggagattccaaaaaagttttgggcgacccgtatttt
aagacattgggaaaggacgcgttagaaatatctctgcgggattttaggaaattatttaaa
acaaaatacataacccccttaatcccccttaccttaagggggacaaagatcaaatcattt
ctgctcaaccagaaaaatcttgccggagtcggaaatattgtcgcagacgaggttttgtgg
cgcgcgaaaatccatccagaaagagaagttagaagtttgagcggattagaagttagaaat
ttgtggaaatcaatcaaatttattttaaaccgcagcataaagtccggcggcactacgatg
cgcgattggttgcaccccgagggaacccgaggggcttattttgaaaaaagatttatttac
gatagagaaggcgagccctgccgaagatgccgcgccggaattatccgcaaaaaaatttcc
ggccgctccggctatttctgcccgcggtgccaaaaaatataa
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