Candidatus Giovannonibacteria bacterium NC_groundwater_467_Ag_B-0.1um_47_26: HYW15_02040
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Entry
HYW15_02040 CDS
T10159
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gbg Candidatus Giovannonibacteria bacterium NC_groundwater_467_Ag_B-0.1um_47_26
Pathway
gbg03030
DNA replication
gbg03430
Mismatch repair
gbg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYW15_02040 (dnaE)
03430 Mismatch repair
HYW15_02040 (dnaE)
03440 Homologous recombination
HYW15_02040 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbg03032
]
HYW15_02040 (dnaE)
03400 DNA repair and recombination proteins [BR:
gbg03400
]
HYW15_02040 (dnaE)
Enzymes [BR:
gbg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HYW15_02040 (dnaE)
DNA replication proteins [BR:
gbg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HYW15_02040 (dnaE)
DNA repair and recombination proteins [BR:
gbg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HYW15_02040 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
T2SSK
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QQG42277
LinkDB
All DBs
Position
complement(328317..331526)
Genome browser
AA seq
1069 aa
AA seq
DB search
MSFVHLHTHSHYSLLDGLSKIDDIVRLAKKHKMPAIAITDHGAMYGVIEFYLKCQKQGVK
PIIGVEAYIANRSRFQKEPHVDNRRYHLTLLAKNNAGYQNLIRITTAAHLEGYYYKPRVD
KELLRKHSEGLIALSGCPAGELGRAIQSGDMEKADAVIKEYREIFGKENYYLEIMHHPEM
PHYREWKDALIKLGRALNVPLAATQDSHYPHPEDKLAHKTLVAISTNSDLEDTAIFSEGG
DYHLISTEEANEYFKDIPEAVKNTEEIAEACNVNLTLGKFIFPNFPPEPKKTADQMLEEL
TLKGTDEHGLRGDREATERLRYELGVIEGKGYSTYFLVVADLIRFAREAKIYTTVRGSVA
GSLVAYLSGITNVNPLEFQLPFERFLNPFRPSAPDIDMDFADNRRQEVIDYAKNKYGADK
VAQIGTFGTMMARGAVRDVARATGKSYETGDRIARLIPMGSQGFPMTIEHAMELEPELKK
FYENNQEAREILDTAKKLEGTVRHVSVHAAGVVIAPKPLVEYVPIQYDPKGTDNLITQYD
MYTVGEDGVGLTKLDFLGIRNLAILENAVRMVQKYRDITIDIEKIPFNDGKTFAMLARGE
TEGVFQLNGAGMTKHLTDLKPSTIHDINAMIALYRPGPMNNIPEYIARKHGERKVTYFHP
KVAKFLEKSYGILVYQDDLLFTAMELAGYDWGSVDKFRKAVGKKIPAEMARQHEIFVKGC
QEHSNIKKEEAEKIWKLFEPFQGYGFNKAHAASYGRVAYQTAYMKANYPGEYMCAILTAE
AGDTEKIGQIITECKRMEIPVLPPSINVSNKDFTLIKSGGAPPPAGGEDQIRFGLLSIKN
VGAGIVEAIIAERKRNGAYKSLAEFLERVESKDLNKKSIESLAKAGALDELGERNEILAN
MDRILEYAKSSHQAASASQSSLFSVMSDKTSVPPLRLEKTRPATLDEKLNWEKELLGLYI
SGHPLDKARAKLANQNLLTIEVFKNKRPAAPVTLAVLIAATRRIFTKTGESMYFLKLQDT
TDEIEAVVFPRALRDAAEHIAENNCVAIRGKYSFRNGAPSIIAEEIKKI
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgtacatctccacacccattcgcactactcgcttctggacggcctttccaag
atagacgatatcgtgcggcttgcgaaaaagcataaaatgccggcaatcgcaattaccgac
cacggcgcgatgtacggcgtaattgagttttatttaaaatgccaaaagcagggagtaaaa
ccgattatcggagttgaagcgtatattgccaaccgctccagatttcaaaaagaaccgcac
gtggacaacaggcgctatcatcttactcttttggcgaaaaacaacgccggctaccaaaat
ttgataagaatcacgacggccgcgcacttggaaggatattattacaagccgcgagttgat
aaagaacttctccgaaagcattcggagggactcatcgcgctctccggatgccccgccggc
gagcttgggcgggcaatacaatccggagacatggaaaaggccgatgccgtgataaaagaa
taccgtgaaattttcgggaaagaaaattactacttggaaatcatgcaccatccggaaatg
ccgcattaccgcgaatggaaagacgctcttattaaacttgggcgcgcgcttaacgtccct
ctggcggcgacgcaggactcgcattatccgcatcctgaagacaagcttgcacataaaacc
ttagtcgcgatttcaacaaactccgaccttgaagacaccgccatcttctccgaaggaggc
gactatcatttaatttctaccgaggaagccaatgaatatttcaaagatatcccggaagca
gtcaaaaacacggaagagatcgcggaggcatgcaacgtgaatctcacattgggcaaattc
attttcccaaatttccccccggaacccaaaaaaacggccgaccaaatgctggaagagctg
acattaaaagggacagatgagcacggcctccgcggcgaccgcgaggcgacagagcgcttg
cggtacgagcttggcgtaatagaaggaaaaggatactcaacttattttctggtagtggcc
gacctcatacgtttcgcgcgggaagcaaaaatttataccaccgttcgcggctcggtcgcg
ggttcactggtcgcgtatctctccggcattaccaacgtaaacccgctggaattccaactg
ccatttgagcgttttttaaatcctttccgcccttcggccccggacatagacatggacttt
gccgacaaccgcaggcaggaagttattgactacgccaaaaataaatacggagccgacaag
gtcgcccaaatcggcacgttcggcacaatgatggcaagaggcgccgtgcgggacgttgcg
cgcgcgaccggaaaatcgtatgaaaccggagaccggattgcccgcttgataccgatgggc
tcgcagggctttccgatgacaattgagcacgccatggagcttgagccggagctgaaaaaa
ttttatgaaaataaccaggaagcgcgcgagatacttgatacggcaaaaaaacttgaaggc
acggttcgccacgtttccgtgcacgcggccggagtggtaattgcgcccaagccgctcgtg
gaatacgtgccaatacaatacgacccgaagggaaccgataacctgataacgcaatacgat
atgtacaccgtcggcgaagacggcgtggggctgactaagcttgattttttaggcatccgc
aatttggcaattttggaaaacgcggtccgcatggtgcagaagtaccgcgacataacgatt
gacattgaaaaaattccattcaatgacggcaaaacttttgcgatgctcgcacggggagaa
acggagggcgttttccagttaaacggagcgggaatgacaaaacaccttactgatctcaaa
ccctcgaccatacatgacattaacgccatgatcgccctttacaggccgggacctatgaat
aatatccccgaatatatcgcgcgcaagcacggcgagcggaaagtgacatattttcacccc
aaagtagcgaagtttcttgaaaaatcctatggcattctggtttatcaagatgaccttttg
tttacggccatggagcttgccggatacgactgggggtcagttgataaattccgcaaggcc
gttggtaaaaaaataccggccgaaatggccaggcagcatgaaattttcgtgaaaggatgc
caggagcatagcaacataaaaaaggaggaagcggaaaaaatctggaaattatttgaacca
ttccagggatacggatttaataaagcccatgcggcaagctacggccgggtagcttaccag
acggcgtatatgaaagccaattatcccggagaatacatgtgcgccatacttacggctgaa
gccggagacacggaaaaaatcgggcaaataataaccgaatgcaaaaggatggaaataccg
gtcctcccgccgagcattaatgtttccaataaagattttactttaattaaaagcggcggc
gctcctccgccagctggcggagaagaccagattcgcttcggacttctatcaattaaaaat
gtgggcgccggaatagtagaggccattattgccgaaaggaaacggaacggcgcttataaa
tctttggctgaatttttggaaagagttgaatcaaaagacctgaacaaaaaatccattgaa
tcattggctaaagccggcgctttggacgaactcggcgaaaggaacgagattttggcgaat
atggacagaattctggaatacgccaaatcctcgcatcaggccgcctccgccagccaatcc
tcgctctttagcgtaatgtccgacaaaacatccgtcccgccgctccgtttggaaaaaacc
aggccggccacgctggatgaaaaactgaattgggaaaaagagcttttggggctctacatt
tcaggccatccgctggacaaagcccgggccaagctcgccaatcaaaatcttcttaccata
gaagtttttaaaaacaaaagaccggctgccccggtgactctggccgtgcttatcgcggca
acgcgccggatttttacgaaaaccggcgaatcaatgtattttttgaagcttcaggatacg
acagacgagattgaagcagttgttttcccgcgggcgctccgcgacgccgccgaacacatt
gcggaaaacaactgcgtcgccatccgcggcaaatattccttccgcaacggcgcgccttca
attattgcggaggagattaagaaaatttaa
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integrated database retrieval system
