Granulibacter bethesdensis CGDNIH2: GbCGDNIH2_0149
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Entry
GbCGDNIH2_0149 CDS
T03083
Name
(GenBank) ATP-dependent helicase hrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
gbh
Granulibacter bethesdensis CGDNIH2
Brite
KEGG Orthology (KO) [BR:
gbh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbh03019
]
GbCGDNIH2_0149
Enzymes [BR:
gbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GbCGDNIH2_0149
Messenger RNA biogenesis [BR:
gbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GbCGDNIH2_0149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
CON_HrpB
AAA_22
AAA_19
HA2_C
Motif
Other DBs
NCBI-ProteinID:
AHJ67136
LinkDB
All DBs
Position
complement(165498..167984)
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AA seq
828 aa
AA seq
DB search
MMRPGLCFPARRDMGRTMSVSDLPVKHVLPALRETLIRGNAVLVAPPGAGKTTTVPLFLL
GEEGPFQRIVMLEPRRLAARAAAARMASLIGQKPGELVGYRTRTDSAVSDATRIEVITEG
LLVRRLQSDPGLEGVDLVILDEIHERSLDADIALAFCLDLQRALRPELRLLAMSATADGA
RLSTLMQAGIVESAGQAHPVGITHSARDLTHLRDIPEATARAVRVALSDHQGDLLAFLPG
MGEIRRVQSMLDGCGATVLPLHGDLPPAEQDRALRPLENGGRRVVLATSIAETSLTVPGV
RIVVDSGWRRAPRLDTSTGLTRLATLRISRAAAAQRSGRAGREAPGIAIRLWSQAMERGM
APFDRPEILEAELSGLVLDCAGWGASPSDLPFPDAPPDGAVAAARSLLGDLGALDPEGRI
TEAGRQMARIGAHPRLAAMMLAARTLPERLLAADIAALLEERDPFRNPDAPADLMLRLEA
LRHEDPAADRGALARIRQTAAQYRRRLKTASPAIASPAPAEASEAGPDAVARLIVAAFPD
RVAQARGEAGSFRFSGGGGAKIAVNDPLARCRLLAVASLEVKTAPRIRLAVPVEVETLRD
LAHETTETMHDSTSGTVYIRRKLRLGALVLEDRLEKADPAAHPGASDAMAQAAFAALVWS
DTARQLRARVELMRTLEPDKDWPDWSDDALTATAPDWLGGWLGQGVKPASLDVAAMLRAV
MPWQLAQRLDKEMPTHLALAGNARAGVDYLQPVPVASARAQAFYGLQHTPQLAGGRIPLR
LALLSPAGRPVAITADLAGFWQGSWADVRRDMRGRYPRHRWPENPAEG
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgaccggggctttgtttcccggcacgccgtgatatggggcggaccatgagcgtc
tccgatcttccggtcaaacatgtcctgcccgcgttgcgcgaaaccctgatccggggcaac
gcggttctggtcgcaccgccgggtgcgggcaagaccacgaccgttccgctgtttctgctc
ggcgaggaagggcctttccaacgcatcgtgatgctggagccacgtcgtctggccgcccgc
gccgctgctgcacgcatggcgtcactgatcgggcagaaaccgggagagttggtcggctac
cgcacacggaccgacagcgccgtctccgatgccacaaggatcgaggtgataacggaaggg
ctgctggtccgccgtctgcaatccgatccggggctggagggggtggatctggtcatcctc
gacgaaatccacgaacgcagtctggatgcggatatcgccctcgccttctgtctggacctg
caacgcgccttgcggcccgaattgcggctgctggctatgtcggccaccgcggatggtgca
cgcctttcgaccctgatgcaggccggcatcgtcgaaagcgccggacaggcccatccggtc
ggcatcacccatagcgcgcgcgacctgacccatttgcgcgacatccccgaggccacggcg
cgcgcggtcagggtggctctgtccgatcatcagggtgatctgctggccttcctgcccggg
atgggagaaatccgccgcgtgcaatccatgctggatgggtgtggcgccaccgtgctgccg
ctgcatggcgatctgccacctgccgagcaggatcgcgcccttcgtccactggaaaatggg
ggacggcgcgttgtgctggcgacctcgattgccgaaacctccctcactgttccgggtgta
cggatcgtggtggatagcggctggcgtcgtgcgccgcgtctcgacacttcgaccggtctg
acccggctggcaaccctgcgcatcagccgtgccgccgccgcccagcgatcgggacgcgcc
ggtcgtgaagcgccgggtatcgcgatccggctctggagtcaggctatggagcggggcatg
gcacccttcgaccggcctgaaattctggaggccgaactgtccgggctggtgctggattgc
gcgggctggggcgcatcaccctccgacctgccgtttccggatgctccccctgatggcgcg
gtggcggcggcacggtcgctgttgggtgatctcggtgccctcgatcctgaaggccgcatc
acggaagcgggtcggcagatggcccggatcggcgctcatcccaggctggctgccatgatg
ctggctgcccgcacccttccagagcgcctgctggccgccgatattgccgccttgctggag
gaacgggacccgttccgcaacccggatgcccccgccgacctcatgctgcggctggaggcc
ctgcgccatgaggatcctgcggccgatcgcggagcgctggcccgtatccgccagacggcg
gcccagtatcgccgccgtctgaaaaccgccagccccgctatcgccagccccgctccggcg
gaagccagcgaggcagggcctgatgccgtggccaggctgattgtagccgctttcccggac
cgggtcgcacaggcacggggagaggcaggcagcttccgtttctccggcggaggcggagca
aaaatagccgtgaatgatccccttgcccgatgccgattactcgctgtcgcctcgctggaa
gtgaaaacagcaccgcgtatccggctggccgtgccggtcgaggtcgaaaccctgcgcgac
cttgcccatgaaacgaccgaaacgatgcatgattccaccagcggcacggtctatatccgc
cgcaagctgcgtctgggcgcgctggtgctggaagatcgtctggagaaagccgatcctgcc
gcccatcccggtgcctccgacgctatggcacaggccgccttcgccgctctggtctggagc
gataccgcccggcagctacgcgcccgggtagagctgatgcgcacattggaaccggacaaa
gactggccggactggtccgatgatgctctgaccgccaccgccccggactggctcggcgga
tggctgggacaaggcgttaaaccagcctccctcgatgtagccgccatgctgcgggccgtc
atgccatggcaactggcccagcgtctggacaaggagatgcccacccatcttgccctggcc
gggaatgcccgcgcaggcgtggattatctgcagcctgtaccggttgcctccgcccgggcg
caggctttctacgggttgcagcacacgccgcaactggccggtggacgtattccgctgcga
ctggcattgctctcacccgccggcagaccggtggccattaccgccgatctggccggcttc
tggcagggaagctgggccgatgtccgccgcgatatgcgtgggcgctatccccggcatcgc
tggccggaaaatccggcagaaggatga
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