Granulibacter bethesdensis CGDNIH2: GbCGDNIH2_0836
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Entry
GbCGDNIH2_0836 CDS
T03083
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gbh
Granulibacter bethesdensis CGDNIH2
Pathway
gbh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GbCGDNIH2_0836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbh03400
]
GbCGDNIH2_0836
Enzymes [BR:
gbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GbCGDNIH2_0836
DNA repair and recombination proteins [BR:
gbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GbCGDNIH2_0836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
SecA_DEAD
DUF6866_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHJ69445
LinkDB
All DBs
Position
962979..966428
Genome browser
AA seq
1149 aa
AA seq
DB search
MLTVYGAPEGWDAVLINRRRQETGGVIVHVARDDARVARLAEALRFFAPKVEVLTFPAWD
CLPYDRVSPNPELVSERVATLARLAETPDSPRIVLTTFNALVQRVPPRAQFHGTGLDLGV
GDLADPDEMARFLDQHGYVRAGTVMEAGEYALRGGIVDIFPSGEAEPIRLDLFGDQIESI
RRFDPTTQRSGEAVERLVLRPVSEIPLDKDSITRFRTAWREVFGQDAAQDPIYLSISDGR
RHAGMEHWAPLFHESMETLLDYVPGAVVSLDHQGEDVLQSRLEMIEDHFHARHAPVREGE
TPYRALSPERLYLTRAEWDAAINPRQPVIFSVFDRPDGAQGVDGGGRPGALFAKTAATEG
GNSFQQLRDASQQWAKDGRRLIVAAWSRGSRERLMHLLRENGIKAETAGTFEGARNLPFD
TAAMVVLGLERGFLAEKIGVVSEQDLLGERIARPPRKRKRADQFIAEATEIAEGDLVVHQ
DHGIGRYDGLVTLTVSGAPHDCLRLLYDGNDKLFLPVENIEMLSRFGAETAGVALDKLGG
VSWQSRKAKMKQRIRDMAGELIRIAAERKVREAPMLTPQEGAWDEFCARFPFAETEDQAR
AIADVLEDMASGRPMDRLICGDVGFGKTEIALRAAFVAAMTGAQVAVVVPTTLLARQHYR
TFAKRFEGLPVTVAQLSRMVTAKEASQVRAGLADGSVNIVVGTHALLAKTVQFADLGLVI
VDEEQHFGVSHKEKLKALRADVHVLTLTATPIPRTLQLSLSGVREMSIIATPPVDRLAVR
TFIMPFDSVVVREAIQRERFRGGQVFCVCPRLEDLGRMAERLAEIVPEAKLITAHGQLAP
TELERVMTEFGDGKHDILLATNIVESGLDMPAVNTIIIHRADMFGLGQLYQLRGRVGRGK
QRGYAYLTWPQAHRLSVAAEKRLEVMQTLDTLGAGFTLASHDLDIRGAGNLLGDEQSGHI
REVGIELYQQMLEDAVADMRHASHRESARDWTPNIGLGLPVLIPETYVRDLPVRLGLYRR
IGALASDAETEAMAAELVDRFGPMPEEVENLLQVVSLKRQCRLAGVEKLEAGPKGMVVQF
RGNHFANPAGLIAWLASVQGPGGVPGQGLKLRPDHKLALVYDMTVAERVQVAKTLLGNLV
RLTQQAQAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgctgacagtttacggtgctcccgagggttgggatgcggttctgatcaatcgccgccgt
caggagacgggtggggtgatcgtgcatgtggcgcgggatgatgcccgtgtggcgcgtctg
gccgaggcgctgcggttttttgcgccaaaggtcgaggtgctgactttccccgcctgggat
tgtctgccgtacgaccgtgtttcccctaatccggagctggtcagtgaacgtgttgccacg
ctggcgcggttggcggagacgcctgattctccacgaatcgtgctcacgacattcaatgcg
ctggtgcagcgtgtgccgccacgggcccagtttcatggcacggggcttgatcttggggta
ggcgatctggccgacccggatgagatggcgcggtttttggaccagcacggctatgtgcgc
gccggcacggtcatggaggcaggggaatacgcgctgcggggtggaatcgtcgatattttc
ccctccggtgaggctgagccgatcaggctcgacctgttcggcgatcagattgaaagcatc
cgccgcttcgaccccactacccagcgcagcggtgaggcggtggagcggctggtgttgcgc
ccggtcagcgaaattcccctcgacaaggacagtatcacccgttttcgcactgcctggcgg
gaggtattcggtcaggacgcggcgcaggatccgatctatctgagtatttccgatgggcgg
cgtcatgccggtatggagcattgggcacccctgtttcatgaaagcatggaaacccttctg
gactatgtgcccggcgcggtggtgagtctggaccatcagggcgaggatgttctgcaatcc
cgtcttgagatgatcgaggatcattttcatgcccgccatgctccggtgcgggagggcgaa
acaccctatcgggccttgtcaccggagcggctttatctgacccgtgccgaatgggatgcg
gcgatcaatccgcggcagccggtgattttttccgtgttcgaccggccggatggagcacag
ggcgtggatggcggtggccgtcccggggcgctcttcgcgaaaacagccgcgaccgaaggc
ggcaattcctttcagcaattgcgggatgcgtcccagcaatgggcgaaagatggccggaga
ctgatcgttgccgcatggtcgcgcggctcccgcgagcggctgatgcatctgctgcgtgag
aacggcataaaggcagagaccgccggaacgttcgagggcgcgcgcaacctgcccttcgat
acggcggcgatggtggtgctggggctggaacgcggatttctggccgaaaaaatcggtgtg
gtcagcgaacaggatctgttgggcgagcgtatcgcccgtccgccgcgcaagcgcaaaaga
gcggaccagtttatcgccgaggccaccgaaatcgccgagggtgatctggtggtgcatcag
gatcacggcattggtcgctatgacgggctggtgacgctgacggtcagtggtgcgccgcat
gactgtctgcgcctgctgtatgacggtaacgacaagctgttcctgccggtcgagaatatc
gagatgctgtcccgtttcggtgcggaaacggcgggtgtggcgctggacaagctcggcggc
gtcagctggcagagccgcaaggcgaagatgaagcagcgtatccgcgatatggccggagag
ctgatccggatcgccgcggagcgtaaggtgcgtgaagcaccgatgctgaccccgcaggaa
ggcgcgtgggatgagttctgtgcccgtttccccttcgcggagacggaggatcaggcgcgg
gccatcgccgatgtgctggaggatatggcttccgggcgtccaatggatcgtctgatctgc
ggcgatgtcgggttcggcaagaccgagatcgccttgcgggcggctttcgtggcggcgatg
acgggcgcacaggtggcggtggtggtgccgaccaccctgctggcgcggcagcattaccgg
accttcgccaaacggttcgaaggactgccggtgacggttgcccagctctcccgcatggtc
acggccaaggaagccagccaggtgcgggcggggctggcggatggctcggtgaatatcgtg
gttggcacgcatgcgctgctggccaagacggtccagtttgccgatctcggcctggtgatc
gtggatgaggagcagcatttcggggtctcccacaaggagaagctgaaagcattgcgggcc
gatgtgcatgtgctgacgctgacggcaacgccgatcccgcgcacgcttcagctcagcctg
tccggggtgcgggagatgagcatcatcgcgacaccgcccgtggatcggctggcggtgcgc
actttcatcatgccattcgacagcgtggtggtccgggaggcgatccagcgcgagcgtttc
cggggtggtcaggttttctgtgtctgcccgcgtctggaagatctgggccgtatggcggaa
cgtttggcggaaatcgtgccggaggcgaagctgatcaccgcgcatgggcagttggccccc
accgagcttgagcgggtgatgaccgaattcggtgacggcaagcacgatattctgctggcg
acgaatatcgtcgaaagcgggctggatatgccggcggtgaacacgatcatcatccatcgt
gccgatatgttcggtctggggcagctttatcagctgcgcggacgggtcgggcgtggcaag
cagcgtggctatgcctacctgacctggccgcaggcgcatcgtctgtcggtcgcggcggaa
aagcggctggaagtgatgcagacgctggatacgctgggggcaggctttacgcttgccagc
cacgatctggatattcgcggtgcgggtaatctgctgggtgacgaacagtccggccatatc
cgcgaggtcgggatcgagctttatcagcagatgctggaagatgcggtcgctgatatgcgc
catgccagccatcgggagtcggcacgcgactggacgccgaatatcggtctgggtctgccg
gtgctgatcccggaaacctatgtgcgcgatctgccggtgcgccttggcctgtatcgtcgc
atcggtgcgctggcatcggatgcggagaccgaagccatggcggcggaactggtggaccgg
ttcggccccatgccggaggaggtcgaaaacttgcttcaggtggtatcgctcaaacggcag
tgccgtctggccggggtggagaagctggaggccgggccgaaaggcatggtggtacagttc
cggggcaatcattttgccaacccggccggtctgatcgcctggctcgccagtgttcaggga
ccggggggtgttccggggcagggcctcaaattgcggcctgatcacaagctggcgctggtc
tacgacatgactgtggcagagcgtgtgcaggttgcgaaaaccctgctgggcaatcttgtt
cgcttgacgcaacaggcgcaggcggcatga
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integrated database retrieval system
