Granulibacter bethesdensis CGDNIH2: GbCGDNIH2_1280
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Entry
GbCGDNIH2_1280 CDS
T03083
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gbh
Granulibacter bethesdensis CGDNIH2
Pathway
gbh03030
DNA replication
gbh03430
Mismatch repair
gbh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GbCGDNIH2_1280
03430 Mismatch repair
GbCGDNIH2_1280
03440 Homologous recombination
GbCGDNIH2_1280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbh03032
]
GbCGDNIH2_1280
03400 DNA repair and recombination proteins [BR:
gbh03400
]
GbCGDNIH2_1280
Enzymes [BR:
gbh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GbCGDNIH2_1280
DNA replication proteins [BR:
gbh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GbCGDNIH2_1280
DNA repair and recombination proteins [BR:
gbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GbCGDNIH2_1280
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AHJ68916
LinkDB
All DBs
Position
complement(1464037..1467468)
Genome browser
AA seq
1143 aa
AA seq
DB search
MAHANFVHLRVHSAYSLSEGAIKTDKIPALARQMAMPAVAMTDSGNLFGILEFSQACAGK
GVQPIIGCQIGLARPEQQQRLPPDQLVLLARDEAGLANIQRLSSLGFLQGEPGAKPQLPL
ETILAHAEGVMLLTGGTSGPLARLLAEGQKGEAERLLAVLKEAFPDRTVIELHRHGLRLE
KAIEPGLIALADAAGLPLVATNDCYFAQPDMYEAHDALLCIAEGRVLSETDRRRVTPDHW
FKPPEMMRALFSDLPEACDNTIAIARSCVVMAETRKPLLPVCPKVHEGQTEDETVRAMAV
EGLERRMEDVGAGPEDRARYRERLDYELDVIARMGFPGYFLIVADFIQWAKANDIPVGPG
RGSGAGSVVAWALTITDLDPLRFNLLFERFLNPDRISMPDFDIDFCQDRRDEVISYVRGE
YGGDRVAQIITFGKLQAKAAVRDVGRVLGMPFGQVNKVAELIPNNPAKPPTLQEAIDGEP
RLQQMRESDEAVKRLLEIALQIEGLYRHASTHAAGVVIGDRPLVELVPLYRDPKSDFLVT
QFSMKHVENAGLVKFDFLGLTTLTILQRAVKFLAGLGVSVDLAHVPLDDERTYQMLQRGD
AGGVFQFESQGMRDVLRQMRPDRFEDLIAAVALYRPGPMANIPAYCQRKHGEAWEPPHED
IRDILGETYGIMVYQEQVMQIAQKLAGYSLGAADSLRRAMGKKIRAEMETHRSIFAEGAS
KRGIPDAKSGEIFDLMVKFADYGFNKSHAAAYALVAYQTAYMKANYPEPFLAACMSLAIN
NTDKLAALRQEATRLGISVLPPDINCSAADFRVEQREDGRLAIRYALAAIKRVGLSAMEA
VVAARGEQAFTDLADFAARVDPRQLNRMQIENLARAGAFDSLVPNRAAVHGAADMILRRA
QAASEEKNSGQIGLFAGAGTPEPLRLPSCPDWPDMERLSFEAEAIGFHLTAHPLDVYTVT
LQKLRVLPSNRIEEHAARHGDQRVRLAGCVVNAKERTTRTGSRMAWVRLSDAGGSYEITV
FSEVLSRSRDALRIGACVLVTADIKAEGEDSIRITAQDIMPLDDAAGGTAGMMRVWLKDN
ADIGQIRAVLSRPDTKGKGHVVLIPRLNEDQEMEIELPGGFNVTPRLGQALKLIPGVERV
EEV
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacgcgaatttcgtccatctgcgggttcattccgcttattctttgagcgaaggt
gcgatcaagaccgataaaatcccggctttggcgcggcaaatggccatgcctgctgtcgcg
atgacggatagcggcaatctgttcggcattctggagttcagtcaggcctgtgccggaaag
ggagtgcagccgatcattggctgtcagatcggtctggcccggcctgagcaacaacaacgt
ctgccgcctgatcaactggttttgctggcgcgggatgaggcgggtctggcgaatatccag
cgtttatcatcgctgggttttcttcagggcgagccgggggcgaagccgcaactgccgttg
gagacgattctggcgcatgcggagggggtgatgctgctgactgggggcacctcaggaccg
ctggcccgtctattggcggaggggcagaagggggaggccgaacggttactggccgtactg
aaggaggcttttcctgatcgcacggtgatcgagctgcatcggcatggtctgagactcgag
aaagcgatcgagccgggcctgattgctctggcggatgcggctggcttgcccttggtggcc
accaatgactgctatttcgctcagccggacatgtatgaggcgcatgatgcgctgctctgt
atcgccgaaggacgggtgctgtcggagacggatcgccgccgcgtcacaccggaccattgg
ttcaaaccaccggaaatgatgcgcgccctgttttccgatctgccggaggcttgcgacaac
acaatcgcgattgcccgtagctgtgtggtgatggcggagactcgtaaaccactgctgccg
gtctgcccgaaagtacatgaagggcagacggaggatgagaccgtccgcgctatggccgtt
gaaggccttgagcggcgaatggaagatgtcggggcagggccggaggatcgtgcccgctat
cgcgaaaggctggattacgagctggatgtcatcgcccgcatggggttccccggttatttc
ctgatcgtcgccgacttcatccagtgggccaaggcgaacgatattccggtggggccgggg
cgcggatcaggtgccggttcagtggtggcatgggcgctgacgatcaccgatctggacccg
ctgcggttcaatctcctgttcgagcggttcctgaatccggatcgtatctccatgccggat
ttcgatatcgatttctgccaggaccggcgtgacgaagtcatcagctatgtacgtggtgag
tatggtggtgaccgcgtggcgcagatcatcaccttcggtaagctgcaggcaaaagccgcc
gtgcgcgatgtcggtcgtgtgctggggatgcccttcggtcaggtcaacaaggtcgcggag
ctgatcccgaacaatcccgccaagccgccgaccttgcaggaagccatcgacggagagcct
cgtctgcaacagatgcgggagagcgacgaagcggtcaaacgcctgcttgaaatcgctttg
cagatcgaggggctgtaccgccatgccagtacccatgccgccggtgtagtgatcggagac
cggccgctggtggagctggtgccgctttaccgcgatccgaaatccgattttctcgtcacg
cagttctcgatgaagcatgtcgagaatgccgggctggtgaaattcgacttcctcggcctg
acgactctgaccatcctgcaacgggccgtaaaatttctggccggtctgggggtgagtgtc
gatctggcgcatgtgccactggatgacgaacgtacctatcagatgctccagcgtggcgat
gcgggtggtgtattccagtttgaaagtcagggcatgcgggatgtgctgcggcagatgcgc
ccagaccgtttcgaggatctgattgccgcggtcgcgctgtatcgccctggcccgatggcg
aatatccccgcctactgccagcgcaaacatggcgaagcctgggagccgccgcacgaagat
attcgcgatattctcggcgagacctacggcatcatggtctatcaggaacaggtcatgcag
atcgcccagaaactggcgggctactcgctgggggcggcggacagcctgcgccgtgccatg
ggcaagaaaatccgtgcggagatggaaacccatcgttccatctttgccgagggagcctcc
aaacgcggcatcccggatgccaaatcaggcgagattttcgacctgatggtcaagttcgcc
gattacggcttcaataaatctcacgctgccgcctacgcgctggttgcctaccagacggcc
tatatgaaggccaattatccggagccgtttctggctgcctgcatgagtctggcgatcaat
aatacggacaagctcgcagccttgcggcaggaagcgaccaggctgggtatttcggtgttg
cccccggatatcaactgctcggcagcagatttcagggtcgagcagagggaggatggcagg
cttgccatccgctatgctctggccgcgatcaagagggtcggtctgtccgcgatggaggca
gtggtcgctgcgcgtggcgaacaagccttcaccgatctggcggatttcgcagccagggtt
gacccacgccagctcaatcgcatgcagatcgaaaatctggcgcgggcaggtgccttcgac
tccttggtacccaaccgggctgcggtgcatggcgcggcggacatgatcctgcgccgggcg
caggctgcatcggaggaaaaaaactccggccagatcgggctgtttgcgggggccggtacg
ccggagccattgcgtctgccatcctgccccgactggccggatatggagcggctgagcttc
gaggccgaggccatcggctttcatctcaccgcccatccgctggacgtctatacggtgacg
ttgcagaagctgagggtgcttccgagcaaccggatcgaggaacatgcggcgcgccatggc
gatcagcgtgttcgtctggccggctgcgtggtgaatgcgaaagagcgtaccacccgcacc
ggcagccgcatggcctgggtgcgtctgtccgatgctggcggcagctatgaaattacggtg
ttcagtgaggttctttcccgttcccgcgacgcgctgcggatcggtgcctgtgtgctggtg
actgctgatatcaaggccgaaggggaggattcgatccgcattacggctcaggacattatg
cctctcgatgatgcggcggggggcacagccgggatgatgcgcgtctggctgaaagacaat
gccgatatcgggcagatccgtgcggtgctgtcccgtccggatacgaaggggaaggggcat
gtcgtcctgattccacgtctcaatgaggatcaggagatggaaatcgagcttccgggtggt
ttcaatgtcacccctcgtctggggcaggccctgaaactcatcccgggcgtggagcgggta
gaggaggtctga
DBGET
integrated database retrieval system
