Granulibacter bethesdensis CGDNIH2: GbCGDNIH2_1286
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Entry
GbCGDNIH2_1286 CDS
T03083
Name
(GenBank) Metal-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gbh
Granulibacter bethesdensis CGDNIH2
Pathway
gbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GbCGDNIH2_1286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbh03019
]
GbCGDNIH2_1286
Messenger RNA biogenesis [BR:
gbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GbCGDNIH2_1286
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AHJ68910
LinkDB
All DBs
Position
complement(1472150..1473808)
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AA seq
552 aa
AA seq
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MTDTHTEIAFLPLGGTGEIGMNLNLYRSRSPAGEHWLAIDCGIGFGGTELPEVDVMMADP
SFIAERRDRLTGLVITHAHEDHIGAVAWLWPQLRCPVYASPFAAMVLRRKLSEAQLQNEV
RILPLPLGGALSIGPFFLRTFRMAHSTPESLAIAIDTPHGAILHTGDWKLDPDPLVGPPT
DEEGLRALGDEGVLAIVCDSTNAMVEGHSGSESDVRRGLRDAIAGLSGRVAVTCFASNVA
RVESIAMAAEEAGRSVALVGRSLRNLNTAARDCGYLRDVQQFLSEDDALSVPDDNLLMIV
TGSQGEPRSALARIAADTHPNIALGEGDTVVFSSRVIPGNERAVNTVQDNLVRRGVHLIT
DSEATVHVSGHPAREELRRLYQLVRPRYSVPVHGEWRHLAAQADLAAEMQAEPVMLEDGD
ILSFGSGRPEIVDSAPVGRLVLDGGRLLPLNGGVLSARRRMLYNGVVLASIAVDEDGHLM
GRPKLSAPGLFDSQEAEAARVINEFAASMDSLPASLRHDDALLTEAARSALRRALGRKLQ
KRPLVDVHLLRI
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacacatacggagattgctttcctgcccctgggggggacgggcgagatcggc
atgaacctgaatctttaccggtcgcgcagcccggcgggggagcattggctggcgattgac
tgcggcatcggctttggcggcacggagctgccggaagtcgatgtgatgatggccgatccc
tctttcattgcggagcgacgggatcggctgaccgggctggtgatcacgcatgcgcatgag
gaccatatcggtgcggtggcatggttgtggccgcaacttcgctgccctgtctatgcatcc
ccgtttgccgcgatggtgctgaggcgcaagctgtccgaggcgcaattacagaatgaagtg
agaattcttcctctgcccctcggcggagcgctgagcatcgggccgttcttcctgcgtaca
ttccgcatggcgcattccacaccggaatctctggcgattgccatcgacactccgcatggc
gcgatcctgcataccggtgactggaaactcgatcccgatcctctggtcggtccgccgacc
gatgaggaagggttgcgcgcgctgggggatgaaggcgtgctggcgatcgtctgcgattcc
accaatgcaatggtggagggacatagcggctccgaatccgatgtgcgccgtggcttgcga
gatgcgattgccggtttgagcggccgtgtggcggtgacctgcttcgccagcaatgtcgcg
cgggtggaaagcatcgccatggcggcagaggaagccggacgcagcgtggctctggtgggc
cgttctttgcgcaatctgaatacggcggcgcgtgactgcggttatctgcgggatgtgcag
cagttcctgtccgaggatgatgcgctgtcggtgcccgatgataatctgctgatgatcgtt
acaggtagccagggtgaacctcgttctgcactggcccggattgccgcggatacgcatccc
aatattgcccttggggaaggggatacggtggtgttttccagccgtgtcatccccggtaat
gagcgggcagtgaataccgttcaggataatctggtgcgccgtggcgtgcatctgatcact
gattccgaagcaaccgtgcatgtctccggccatccggcgcgggaggaattgcggcgtctc
tatcagctggtacgcccgcgttactctgtcccggtgcatggcgaatggcgtcatctggcg
gcgcaggctgatctggcagcggaaatgcaggccgaaccggtgatgctggaagatggcgat
attctcagcttcggctccgggcgtcctgaaatcgtggacagtgctccggtaggtcgtctg
gtgctggatggcggcaggcttttgccactcaatggtggcgtgctctcggcacggcggcgg
atgctttataatggcgtggtgctggcgagtattgcggtcgatgaggatggccatctgatg
ggccgtcccaagctcagcgcaccggggctgttcgattcgcaggaagcggaagcggccagg
gtgatcaacgagtttgcggcctctatggatagtctgccggcttccctgcggcatgacgat
gcattgctgacggaggccgcccgtagtgccttgcgtcgcgctctgggacgcaaattgcaa
aagcgtccgctggtagacgtacatctgctgcgtatctga
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