KEGG   Granulibacter bethesdensis CGDNIH2: GbCGDNIH2_1286
Entry
GbCGDNIH2_1286    CDS       T03083                                 
Name
(GenBank) Metal-dependent hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
gbh  Granulibacter bethesdensis CGDNIH2
Pathway
gbh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gbh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GbCGDNIH2_1286
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gbh03019]
    GbCGDNIH2_1286
Messenger RNA biogenesis [BR:gbh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GbCGDNIH2_1286
SSDB
Motif
Pfam: RNase_J_b_CASP RMMBL Lactamase_B Lactamase_B_2 RNase_J_C Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: AHJ68910
LinkDB
Position
complement(1472150..1473808)
AA seq 552 aa
MTDTHTEIAFLPLGGTGEIGMNLNLYRSRSPAGEHWLAIDCGIGFGGTELPEVDVMMADP
SFIAERRDRLTGLVITHAHEDHIGAVAWLWPQLRCPVYASPFAAMVLRRKLSEAQLQNEV
RILPLPLGGALSIGPFFLRTFRMAHSTPESLAIAIDTPHGAILHTGDWKLDPDPLVGPPT
DEEGLRALGDEGVLAIVCDSTNAMVEGHSGSESDVRRGLRDAIAGLSGRVAVTCFASNVA
RVESIAMAAEEAGRSVALVGRSLRNLNTAARDCGYLRDVQQFLSEDDALSVPDDNLLMIV
TGSQGEPRSALARIAADTHPNIALGEGDTVVFSSRVIPGNERAVNTVQDNLVRRGVHLIT
DSEATVHVSGHPAREELRRLYQLVRPRYSVPVHGEWRHLAAQADLAAEMQAEPVMLEDGD
ILSFGSGRPEIVDSAPVGRLVLDGGRLLPLNGGVLSARRRMLYNGVVLASIAVDEDGHLM
GRPKLSAPGLFDSQEAEAARVINEFAASMDSLPASLRHDDALLTEAARSALRRALGRKLQ
KRPLVDVHLLRI
NT seq 1659 nt   +upstreamnt  +downstreamnt
atgaccgacacacatacggagattgctttcctgcccctgggggggacgggcgagatcggc
atgaacctgaatctttaccggtcgcgcagcccggcgggggagcattggctggcgattgac
tgcggcatcggctttggcggcacggagctgccggaagtcgatgtgatgatggccgatccc
tctttcattgcggagcgacgggatcggctgaccgggctggtgatcacgcatgcgcatgag
gaccatatcggtgcggtggcatggttgtggccgcaacttcgctgccctgtctatgcatcc
ccgtttgccgcgatggtgctgaggcgcaagctgtccgaggcgcaattacagaatgaagtg
agaattcttcctctgcccctcggcggagcgctgagcatcgggccgttcttcctgcgtaca
ttccgcatggcgcattccacaccggaatctctggcgattgccatcgacactccgcatggc
gcgatcctgcataccggtgactggaaactcgatcccgatcctctggtcggtccgccgacc
gatgaggaagggttgcgcgcgctgggggatgaaggcgtgctggcgatcgtctgcgattcc
accaatgcaatggtggagggacatagcggctccgaatccgatgtgcgccgtggcttgcga
gatgcgattgccggtttgagcggccgtgtggcggtgacctgcttcgccagcaatgtcgcg
cgggtggaaagcatcgccatggcggcagaggaagccggacgcagcgtggctctggtgggc
cgttctttgcgcaatctgaatacggcggcgcgtgactgcggttatctgcgggatgtgcag
cagttcctgtccgaggatgatgcgctgtcggtgcccgatgataatctgctgatgatcgtt
acaggtagccagggtgaacctcgttctgcactggcccggattgccgcggatacgcatccc
aatattgcccttggggaaggggatacggtggtgttttccagccgtgtcatccccggtaat
gagcgggcagtgaataccgttcaggataatctggtgcgccgtggcgtgcatctgatcact
gattccgaagcaaccgtgcatgtctccggccatccggcgcgggaggaattgcggcgtctc
tatcagctggtacgcccgcgttactctgtcccggtgcatggcgaatggcgtcatctggcg
gcgcaggctgatctggcagcggaaatgcaggccgaaccggtgatgctggaagatggcgat
attctcagcttcggctccgggcgtcctgaaatcgtggacagtgctccggtaggtcgtctg
gtgctggatggcggcaggcttttgccactcaatggtggcgtgctctcggcacggcggcgg
atgctttataatggcgtggtgctggcgagtattgcggtcgatgaggatggccatctgatg
ggccgtcccaagctcagcgcaccggggctgttcgattcgcaggaagcggaagcggccagg
gtgatcaacgagtttgcggcctctatggatagtctgccggcttccctgcggcatgacgat
gcattgctgacggaggccgcccgtagtgccttgcgtcgcgctctgggacgcaaattgcaa
aagcgtccgctggtagacgtacatctgctgcgtatctga

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