Granulibacter bethesdensis CGDNIH2: GbCGDNIH2_2009
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Entry
GbCGDNIH2_2009 CDS
T03083
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
gbh
Granulibacter bethesdensis CGDNIH2
Brite
KEGG Orthology (KO) [BR:
gbh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbh03400
]
GbCGDNIH2_2009
Enzymes [BR:
gbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GbCGDNIH2_2009
DNA repair and recombination proteins [BR:
gbh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
GbCGDNIH2_2009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AHJ68136
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All DBs
Position
2285213..2288233
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AA seq
1006 aa
AA seq
DB search
MVPPVHSGRSGGRRTETLRGGNRRNALGSTMRITSIPPDWPFLDTVASAWLGKGEQSPLD
TADGIILLPTRRAARALADAFLRISNGRPLLLPRITALGALDETPLALHGALDLPPAVDT
PRRLAELTRLILALPDPALSADNAWMLARELAKLLDEAARAGIDLATSLPDAVDPSFAAH
WQTTLTFLQIVTRAWPDWLAEEGLTDPAARQAALLRIQATHWQDHPPATRLWAAGISGAA
PAEAMLLKTIARLKQGLVILPGLDMTMPEEAWGMLEASHPQAGMRDLLAMMDARRDDVAP
WGLTPPPSRPADRSRLLHQALLPAEALTLWRETTPPSSESVFRLEAEDEQQEAVAIALIL
RDALETPGRRAALITPDRGLAVRVSTELARFGVIADDSAGEPLAETPPALFLRLLAETVR
SGFSPVSLLSLLKHPMTALGMDRLMTLHAARGLEQHALRGPRPPPGLSGLRAVLEAGKTE
AAALIDRLEQVLHPLIDLVAQEKLAPHDYLRALLTAGEAVAASDTHSGAERLWALEEGEA
LAVLLAETLPALTVLPPQPPDTLPGLFDAVLEGIAVRSRRALRRFGENDAEHPRLFIWGL
LEAQLQHVDVAVLGGLSEGVWPPATDPGPWMSRPMRSRVGLPSAERIIGQAAHDFVQAAC
SASVAILSCPARREGAPVVTARWLARIDALLKGHGKHLPTHPATAWAGMLDQPERPSPVR
PPRPCPPRRSRPRSLSVTEIGRWLSDPYRVYAERILKLKPLDPLEQDTDAADFGMIVHDG
MQCFLENAARQWPDGDLPAALRTAFRVALDRHNPRPALRSWWLPRLDRIAAWVATREQRD
TKIHTETSGIWHLSAFPGGPFTLKGRADRIEIRRDGSIRLLDYKTGTVPSAPAILSGEAP
QLPLEAAMLRAGAFADVPAQYPSELVYWRLSGGRVAGEEVILGRKAPAAWAEEQAQLAAE
KLRDLVTRYDDPDFPYLAQPFAPGHAPMDAYAHLARVPEWADGDES
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
gtggttccacctgtccactccggaagatctggaggtcgcagaacagaaactctacgcggc
ggaaaccggcgaaacgcgttaggcagcaccatgcgcatcacctccatcccgccggactgg
ccgtttctcgacactgtcgcgtctgcctggctggggaagggtgagcaaagcccgcttgat
acggctgatggcatcatcctgctgccgacacggcgcgctgcgcgggcgctggccgatgcg
tttctgcgtatctccaatggccgcccgttgctgttgccacgtatcacggccctcggcgcg
ctggacgaaacaccgctggccctgcatggcgcactggatctgccgcccgccgtggacacg
ccccgtcgtctggcggagctgacacggctgattctggcattaccagacccggccctgtcg
gcggataatgcatggatgctggccagagaactggccaaactcctggacgaagccgcccgc
gccgggattgatcttgcaacgtccctgcccgatgcggtcgatccatctttcgcagcgcac
tggcagacgactctgacctttcttcagatcgtgacccgtgcctggccggactggctggcg
gaggaaggtctgaccgatccggcagcgcggcaggccgccctgctgcggattcaggcgacg
cactggcaggatcatccgcctgcgacacgtctctgggcggcggggatttccggcgcggcc
ccggccgaagcgatgctgctgaaaaccatcgccagactgaagcagggcctggtgatcctg
cccggcctcgacatgaccatgccggaggaagcatggggcatgctggaggcctctcatcca
caggcggggatgcgcgacctgctggccatgatggatgcaaggcgggatgatgtagcacca
tggggattgacgcccccgccttcccgccctgctgatcgctcccgtctgctgcatcaggcg
ctgcttcctgccgaagccctgacgctctggcgcgaaaccacgccgccttcctccgaatcc
gtgttccgtctggaagcggaagatgaacagcaggaggccgtcgccatcgcgctgatcctg
cgggatgcgctggagacaccgggacggagggccgcgctgatcacgccggatcgcgggctg
gcggtgagagtgtcaaccgagttggcccggttcggcgtcatcgccgatgacagcgccggc
gaaccgcttgccgaaacaccccctgccctctttctgcgcctgctggcggaaacggtgcgg
agcggtttctctccggtctcgttgctatccctgctgaaacatcccatgacagcgctgggc
atggaccgtctgatgacgctgcatgcggcgcgcgggctggaacagcacgccctgcgcggc
ccgcgtcctccgccgggcctgtccgggctgcgtgcggtcctcgaagccggaaaaacggaa
gccgccgctctgatcgaccggctggaacaggttctgcatcccctgatcgacctcgtagca
caggaaaagcttgcgccccatgactacctgcgcgccttgctgaccgccggggaagccgtg
gccgccagcgatactcactccggcgccgagcgtctgtgggcgttggaggaaggggaggcg
ctagccgtcctgctggcggagacgctgcccgccctgacggtgctgccgccgcaaccgccc
gatacgctgccgggcctgttcgacgcggtactggaaggcattgccgtccgcagccgccgt
gccctgcgccgcttcggcgagaacgatgccgaacatccgcgcctgtttatctggggcctg
ctggaggcacagcttcaacatgtggatgtggctgtgctgggtggtctgagcgagggggta
tggccccccgccacggatcccggcccatggatgagccgcccgatgcgcagccgtgtcggg
ctgccgagcgccgagcgaatcatcggtcaggcggcccatgatttcgtgcaggcggcatgc
agcgcctccgtggcgatcctgtcctgccccgcccggcgggaaggtgcgcctgtcgtcaca
gcacgctggctggcacggatcgacgctttgctgaagggacatgggaaacatctgccgacc
caccccgccaccgcctgggccggaatgctggatcaaccggagcggcccagcccggtcagg
ccgcctcgcccctgcccgccccgccggtcacgtcctcgcagcctgagtgtgacggaaata
ggacgctggctgagcgatccttatcgagtctatgcggagcgtatcctgaaattgaaaccg
cttgatccgctggaacaggatactgatgccgccgatttcggcatgatcgtgcatgatggc
atgcagtgttttctggaaaatgccgcccggcaatggcccgatggggacctgccggccgcc
ctgcgcacggcattccgggtcgcgctggaccgccacaatcctcgccctgccctgcgaagc
tggtggctgccgcgtctcgaccggatcgcggcctgggtggcaacccgggagcagcgggat
acgaaaatccataccgaaacctccggcatctggcatttatcggctttcccgggcggcccc
ttcacgctgaaaggccgcgccgaccggatcgagatcagacgggacggcagtatccgtctg
ctcgattacaaaaccggcacggttccctccgccccggcgatcctcagcggagaggctccg
caactgccgctggaagccgcgatgctgagggctggcgcttttgcggatgtcccggcgcaa
tatccgtccgaactggtgtactggcggctcagtggcggtcgcgtcgcgggggaggaagtc
attctcggcaggaaagcccccgctgcctgggccgaagaacaggcgcaactggcggccgaa
aagctgcgcgatctggtcacacgctatgacgatccggattttccctatctggcgcaacct
tttgcccccggccatgcgcccatggatgcttatgcgcatctggcccgcgtgccggaatgg
gcggatggtgacgagtcatga
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