Granulibacter bethesdensis CGDNIH2: GbCGDNIH2_2436
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Entry
GbCGDNIH2_2436 CDS
T03083
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gbh
Granulibacter bethesdensis CGDNIH2
Pathway
gbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GbCGDNIH2_2436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbh03019
]
GbCGDNIH2_2436
Enzymes [BR:
gbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GbCGDNIH2_2436
Messenger RNA biogenesis [BR:
gbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GbCGDNIH2_2436
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
CMS1
HEM4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AHJ69645
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All DBs
Position
complement(2740504..2741751)
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AA seq
415 aa
AA seq
DB search
MTDPACICRLETTVTDVTFDSFGLAEPILQALQAASFHKPTPIQAGAIPPLLEGRDLLGI
AQTGTGKTAAFSLPLLQHLMQKRERPRAFSTRALILAPTRELAVQIDDNLRMLGGELPIR
RVLILGGVGRKPQVQRMQRGADIVIGTPGRICDLMSTNELLLDQVSHFVLDEADRMLDLG
FMRDIRKVLASLPEKRQSLLFSATMPGEIGRLAEGLLRNPARVRIAVEEPTPDRIAQHVH
FIESTGKRVLLTRLLADRALEKVIVFTRTKHGANRVAEHLEESGIPADAIHGNKSQNARQ
RALERFRSGEARVLVATDIAARGIDVAGVSHVVNFELPNEPESYVHRIGRTARAGQRGIA
ISFCDGSERPFLKAIEKLTRVKMSVAGGVESDLPAEEPRKQPQARRHRPRWRNAA
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatccggcatgcatatgccggctggagacgactgtgacagacgtgacatttgat
agttttggactggccgagcctattcttcaggcgcttcaggcggctagtttccacaaaccg
accccgattcaggccggtgccatccctcctttgctggaaggacgtgacctgctggggatc
gcccagactggaaccggcaagacggcggctttttccctgcctttattgcagcacctgatg
cagaaacgggagcgtccgcgggccttttcaacccgcgctctgattttggccccgacccgc
gaactggccgtgcagattgacgataatctgcgcatgctgggtggtgagctgccgattcgc
cgtgttctgattctgggtggcgttggccgcaagccgcaggtgcagcgcatgcagcgtggt
gccgatatcgtgatcggcacgccgggccgtatctgcgatctgatgagcaccaatgaactg
ctgctggatcaggtgtcgcatttcgttctggatgaagcggaccggatgcttgatctcggc
tttatgcgcgacatccgcaaggttctggcctccctgccggaaaagcggcaatccctgttg
ttctcagccaccatgcccggtgaaatcggacgtctggcagaagggctgctgcgtaatccg
gcgcgcgtgcggatcgcggtggaggagccgactcccgaccggattgcccagcatgttcat
tttatcgaaagcaccggcaagcgcgtgctgttgacccgtctgctggcggatcgggcgttg
gaaaaggtcattgtgtttacccgcaccaagcatggtgccaatcgcgtcgctgaacatctg
gaagaatccggtattccggccgatgccattcatggcaacaaaagccagaatgctcgtcag
cgcgctctggagcgttttcgtagcggagaggcccgggttctggtggccaccgatatcgcc
gcgcgtgggatcgacgttgccggtgtgtcgcatgtcgtcaatttcgaactgccgaacgag
ccggaaagctatgtccatcgtatcggccgcacggcgcgggctggacagagagggatcgcg
atttccttctgtgacggcagcgagcgtccgttcctgaaagctatcgagaagctcacccgc
gtgaaaatgtcggttgccggtggtgtcgaaagtgatcttccggctgaagaaccgcgcaag
cagccgcaggcgcgccgtcatcgtccgcgctggcgcaatgcggcctga
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