Citrifermentans bemidjiense: Gbem_0028
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Entry
Gbem_0028 CDS
T00749
Symbol
hdrD
Name
(GenBank) heterodisulfide oxidoreductase, iron-sulfur cluster-binding subunit D
KO
K00125
formate dehydrogenase (coenzyme F420) beta subunit [EC:
1.17.98.3
1.8.98.6
]
Organism
gbm
Citrifermentans bemidjiense
Pathway
gbm00680
Methane metabolism
gbm01100
Metabolic pathways
gbm01120
Microbial metabolism in diverse environments
gbm01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09100 Metabolism
09102 Energy metabolism
00680 Methane metabolism
Gbem_0028 (hdrD)
Enzymes [BR:
gbm01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.98 With other, known, physiological acceptors
1.8.98.6 formate:CoB-CoM heterodisulfide,ferredoxin reductase
Gbem_0028 (hdrD)
1.17 Acting on CH or CH2 groups
1.17.98 With other, known, physiological acceptors
1.17.98.3 formate dehydrogenase (coenzyme F420)
Gbem_0028 (hdrD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fer4_2
Fer4_8
Fer4
Fer4_17
Fer4_10
Fer4_9
FrhB_FdhB_C
Fer4_6
Fer4_3
Fer4_16
Fer4_7
FrhB_FdhB_N
Motif
Other DBs
NCBI-ProteinID:
ACH37059
UniProt:
B5EJ33
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All DBs
Position
complement(34153..35097)
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AA seq
314 aa
AA seq
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MNAKANKNQSSCIEPSYYQAVTQAIRTQAVQVLKDGTVAGVVGYLPGRRKGTARPALITT
PEEAEKLIFSPACVNNLSVYLTKSKKGVLKQGRIGIVAKGCDMRALAGLMGESQIKREDL
FIIAVDCAGVYGSGAERSESVTEANIARKCVECTVHHPEGADFVAGAATELSGLTPLEAE
EMARIEALPQAERWAFWKEHFSRCIRCMACRQVCPFCYCEQCLCDKNRPQAVENSPRPAG
NTAWHIVRAMHLAGRCGGCAECERVCPMDIPLNLLNRRMAKELKELYDYEAGLAPAEKGP
LTQYREDDDQSFIK
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctaaagcaaacaaaaaccagtcgagctgcatcgagccgtcctactaccaggcg
gtcacccaggcgatccgcacgcaggcagtgcaggtccttaaggatggaaccgtggccggc
gttgtcggttacctccctggccgccgcaaagggacggcccgcccggccttgatcaccacg
ccggaagaggcggaaaaactcatcttctcgccggcctgcgtcaacaacctctcggtctac
ctgaccaagtcgaagaaaggggtgctaaagcagggacggatcggcatcgtcgccaaggga
tgcgacatgcgcgcactggccggactgatgggggaatcccagatcaagcgggaggatctt
ttcatcatcgccgtcgactgcgccggggtctacggctccggggccgagcgcagcgagtcg
gtgaccgaagccaacatcgccagaaaatgtgtggagtgcacggtccatcacccggagggg
gctgatttcgtggcgggcgccgccaccgaactttccggcctgaccccgctggaagccgag
gagatggcgcgcatcgaggcgctgccgcaggcggagcgctgggctttctggaaagagcac
ttttcccgctgcatccggtgcatggcctgccgccaggtctgcccattctgctactgcgag
cagtgcctgtgcgacaagaaccgcccccaggcggtggagaactcccccaggcccgcagga
aacaccgcctggcacatcgtgcgtgccatgcacctggccgggcgctgcggcggctgcgcc
gagtgcgagcgcgtctgcccgatggacatcccgctgaacctcctgaaccggcgcatggcg
aaggagctgaaggagctttacgactacgaggcagggctcgcacccgccgagaaagggccg
ctcacccagtaccgggaagacgacgaccagtcgttcataaagtag
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