Citrifermentans bemidjiense: Gbem_0107
Help
Entry
Gbem_0107 CDS
T00749
Name
(GenBank) 2',5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
gbm
Citrifermentans bemidjiense
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gbm03016
]
Gbem_0107
Enzymes [BR:
gbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Gbem_0107
Transfer RNA biogenesis [BR:
gbm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Gbem_0107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
ACH37138
UniProt:
B5E8F5
LinkDB
All DBs
Position
complement(129392..129946)
Genome browser
AA seq
184 aa
AA seq
DB search
MPRLFVAIDLPEEIKASLSQLSCAVTGARWVAPSEIHLTLRFIGDVDPQTVSKIEKALSA
VQFPSFPLRVAGVGHFPARGYPRVLWVGLEPHPELIALQQRIESALQPAGVSPEDRPFSP
HITLARLKETPPAAVAAFESLHRGLAYPPFPATEYVLYSSVLTPKGAIHRKEEVFRSSEE
AASR
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
ttgccaagactcttcgttgccatcgatctgccagaggaaatcaaagcctctctctcacag
ctttcctgcgctgtgacaggcgccaggtgggtcgctccttccgagatccatctcaccttg
cgcttcataggagacgtcgaccctcagacagtttccaagatagagaaggccttatccgcg
gtgcagttcccctcttttcccctccgcgtagccggggtcggccacttccctgcgcgcggc
tatccccgcgtgctttgggtcgggctggaaccgcaccccgagctcatcgccctgcagcag
cggatcgaatccgcgctgcaaccggcaggtgtttcaccggaagaccgccctttttccccg
cacataacgctcgcccgcttgaaagagacgccccctgctgcggtcgccgccttcgagtcg
ttgcaccgcgggctcgcctacccccctttccccgcaaccgagtacgtcctctactccagc
gtcctcacccccaaaggcgccatccaccgcaaggaagaggtcttccgttcaagcgaagaa
gcggcttcacggtga
DBGET
integrated database retrieval system
