Citrifermentans bemidjiense: Gbem_0159
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Entry
Gbem_0159 CDS
T00749
Symbol
cafA
Name
(GenBank) ribonuclease G
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
gbm
Citrifermentans bemidjiense
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbm03019
]
Gbem_0159 (cafA)
03009 Ribosome biogenesis [BR:
gbm03009
]
Gbem_0159 (cafA)
Messenger RNA biogenesis [BR:
gbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Gbem_0159 (cafA)
Ribosome biogenesis [BR:
gbm03009
]
Prokaryotic type
rRNA processing factors
Gbem_0159 (cafA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
DUF5351
Motif
Other DBs
NCBI-ProteinID:
ACH37190
UniProt:
B5E953
LinkDB
All DBs
Position
190285..191775
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AA seq
496 aa
AA seq
DB search
MGNELVINTTSHETRIALIENGTIAELYVERSRVKGIIGNIYKGRVVRVLPGMQAAFVDI
GLEKAAFLYVADVFDAMDEYDSYIEGEQGDEPMPHPLHPIEELLQEGQELLVQISKEPIG
TKGARITAHISLPGRHLVYMPTVDHVGISRRIEDEAERERLKEIVDRIKPVGGGFIVRTV
SDGKSEEDLVADLHYLTKLWDEIAKKKDKAGAPTLIHSDLDVTQKVVRDILTESVERIVV
DSKPEYDKIVQFISTFMPKMKYSIELYDEEEPIFDHFGLEVEISRALGRKVWLKSGGYII
IEQTEALTAIDVNTGRYVGKHNLEDTILKTNLEAVKEIAYQLRLRNLGGIIIIDFIDMEK
EVNREKVYGALEEALKSDKSKTNILKISELGLVEMTRKRVRESLGRMMCEPCPYCEGRGY
VKSKISVCHEIFRELRREMLDIRGTKVMLTVHPQVADLLYDEERRGLEELEKNFKKRITV
RAKPGFHQEQFEVAVS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacgagctggtcataaacaccacctcccacgaaacccgcatcgcgctcatcgaa
aacggcaccattgcggagctgtacgtcgagaggagcagggtgaaggggatcatcggcaac
atctacaagggaagagtggtccgggtgctgccgggcatgcaggcggcgttcgtggacatc
gggctggaaaaggcagcctttctttacgtggcggacgtcttcgacgccatggacgagtac
gacagctacatcgagggtgagcagggcgacgagccgatgccgcacccgctgcaccccatc
gaggaactgctgcaggaggggcaggaactcctggtgcagatctccaaggagcctatcggg
accaagggggctcgcatcacggcgcacatctcgcttcctgggcgccacctggtttacatg
ccgacggtcgaccacgtcggcatctccaggaggatcgaggacgaagcggagcgcgagcgt
ctgaaggagatcgtggaccgcatcaagccggtcggcggcgggttcatcgtcaggacagtc
tccgacggcaagagcgaagaggacctggtggcggacctccactacctgaccaagctctgg
gacgagatcgccaagaagaaggacaaggcgggagccccgaccctgatccactccgatctc
gacgtaacccagaaggtggtgcgcgacatcctcaccgaatcggtggagcggatcgtagtg
gactcgaagcccgagtacgacaagatcgtccagttcatcagcaccttcatgcccaagatg
aagtactccatcgagctttacgacgaagaggagccgatcttcgaccatttcgggctggag
gtcgagatcagccgcgccttggggcgcaaggtctggctcaagagcggcggctacataatc
atcgagcagaccgaggcgttgaccgcgatagacgtcaacaccgggcgctacgtcggcaag
cacaacctggaagacaccatcctgaagaccaacctggaggcggtgaaggagatcgcctac
cagctgcgcctcaggaacctgggcggcatcatcattatcgacttcatcgacatggagaag
gaggtgaaccgcgagaaggtgtacggcgcgctagaagaggcactgaagagcgacaagtcc
aagaccaacatcctgaagatctcggagctggggctcgtggagatgacccgcaagagggtg
cgcgagagcctgggacgcatgatgtgcgagccctgcccctactgcgaggggcgcggttac
gtgaagtccaagatctcggtctgccacgagatcttccgtgagctgcgtcgcgagatgctg
gacatccgcggcaccaaggtgatgctcaccgtgcatccccaggtggccgacctactttac
gacgaggagcggcgcgggctggaggaattggagaagaacttcaagaagcggatcaccgtc
cgcgccaagcccggttttcatcaggagcagttcgaggttgcggtcagctag
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