Citrifermentans bemidjiense: Gbem_0815
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Entry
Gbem_0815 CDS
T00749
Symbol
mutM-2
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gbm
Citrifermentans bemidjiense
Pathway
gbm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Gbem_0815 (mutM-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbm03400
]
Gbem_0815 (mutM-2)
Enzymes [BR:
gbm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Gbem_0815 (mutM-2)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Gbem_0815 (mutM-2)
DNA repair and recombination proteins [BR:
gbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Gbem_0815 (mutM-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Ribosomal_S13
NFACT_N
DUF7092
Motif
Other DBs
NCBI-ProteinID:
ACH37838
UniProt:
B5EEU2
LinkDB
All DBs
Position
965421..966206
Genome browser
AA seq
261 aa
AA seq
DB search
MPELPDLTIYAENLARKLTGKKIATVSFHDRGRLNVAPDELSAALIGAKVTAVRRTGKQV
SFQADNGAMLRVHLMLTGGFVLTSTEHLDRLEAPVVTVTFNDGSALAVSDPKGWATLTLN
PQPEREAPDALELSADQLQQLCAKQPKALIKALLLDQALIGGIGNAYADEILWEARISPK
SVAGKLPPEAVSALARAIPAVLKDAISELRKRHPDMVAGEYREFLKVHRPGLKQSPTGAP
VIKENISSKQTYYTDEQQLYK
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgccggatctcaccatatacgcggagaacctggccaggaagctgaccggg
aagaagatagcgacagtttccttccatgacaggggacgtctgaacgtagctcccgatgaa
ctatccgccgcgctcataggtgcaaaggtcaccgccgtgcgcaggaccggaaagcaggtt
tctttccaggccgacaacggcgccatgttgcgggttcacctcatgctgaccggcggcttc
gtgctgaccagcaccgagcatctggaccgtctggaggcgccggtggtgactgtcaccttc
aacgacggttccgcgctcgcggtttcggatcccaaggggtgggcgacgctcaccttgaac
ccgcagccggagcgggaggcgccggacgccttggagctaagcgccgatcagttgcagcag
ctgtgcgcgaagcagccgaaggcgctgatcaaggcgctgctcctggaccaggcgctcatc
ggcggcatcggcaacgcctacgccgacgaaatcctgtgggaggcgcgcatctcccccaaa
tcggtggcgggaaagcttccccccgaggcggtctcggcgctggcgcgggccattcccgcc
gttctcaaggacgccatatcggaactccgcaaacgccacccggacatggtcgccggcgag
taccgcgagtttctcaaggtgcaccgccccggcctgaagcaatcccccaccggcgcgccc
gtcatcaaggagaacatctcctccaagcagacctactacaccgacgaacagcagctctac
aaataa
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