Citrifermentans bemidjiense: Gbem_0927
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Entry
Gbem_0927 CDS
T00749
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta-prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gbm
Citrifermentans bemidjiense
Pathway
gbm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Gbem_0927 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbm03021
]
Gbem_0927 (rpoC)
03400 DNA repair and recombination proteins [BR:
gbm03400
]
Gbem_0927 (rpoC)
Enzymes [BR:
gbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Gbem_0927 (rpoC)
Transcription machinery [BR:
gbm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Gbem_0927 (rpoC)
DNA repair and recombination proteins [BR:
gbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Gbem_0927 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACH37948
UniProt:
B5EFP4
LinkDB
All DBs
Position
1089105..1093253
Genome browser
AA seq
1382 aa
AA seq
DB search
MEDIFNFFDKPKDPLHFSSIKISISSPDKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLMDITLKDLEKVLYFEAYVVTDPKDTGLAFGTVFSEDQYQKALEEYSYGFEAGM
GAAAIRTCLTSMDLDQLSEQLRIEMQEATSEAKRKKTAKRLKVIEAFKNSGNKPEWMILE
CIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELQAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPE
LRLHQCGLPKKMALELFKPFIYNKLEERGFVTTIKSAKKMVEKEKPEVWDVLEEVIKEHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSVESQVEA
RVLMMSTNNILSPAHGKPIIVPSQDMVLGIYYMTRDKHFALGEGKIFASPDEVNIAWDAG
EIHLQARIKVRMKNLVSDEKPTLIETTTGRVLLRDILPDAVPYATINKVMTKKELSNLVD
VCYRLAGNKETVILADKLKAIGFRYAAKAGISISINDMVIPEGKPAIINRATEEVQEIQN
QYTEGLITDGERYNKVIDIWAKSTEDIAKEMLDNLSRDTILDPEGKEVKVPSFNAIHMMA
DSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVAQDAIITEADCGTIDGLTVSSLTEGGEVIEHIGDRILGRVALD
DILDPVTGDVLVPANEEIDETLVAKIEAAGLEKVKIRSVLTCESRRGICAKCYGRDLARG
HLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRRAEQTALEARNEGFAKFININYV
TNSEGHHIVMNRNGELAIVDETGREREKYGVVYGAKIKVSPQEKVAQGQSVAEWDPYTMP
ILTEVAGRVKFGDVIEGVTMEEQVDEVTGLSRKVIIETRDTDKRPRITIKDESGKTAKIG
ENLLARYYLPVGSNINVLEEIEVNAGDVIAKIPRETTKTKDITGGLPRVAELFEARKPKD
FAVITEIDGVVAFGKDAKGKRKVLVTPELGEPKEYLIPKGKHISVHEGDHVRAGEALMDG
SSNPHDILRVLGQKELAKYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRVKDVGDTN
LLIDDQIERWVFEEENEKAMDKGGRPATAESLLLGITKASLSTESFISAASFQETTKVLT
QASIEGKVDSLRGLKENVIMGRLIPAGTGLALYRNLRMVAEEPVIIPEPAEPEDEEIYEE
EA
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
ttggaagacatttttaactttttcgataagccgaaggacccgctccacttctcttccatc
aagatctcgatctcctcgccggacaagatccgcgagcgttccttcggggaagtgaagaaa
ccggaaaccataaactaccgtaccttcaagccggagcgcgatggcctcttctgcgccaag
atcttcggaccgaccaaggattacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgcggcatcgtctgcgagaagtgcggcgtcgaggtcatcccctccaaggtgcgccgcgag
cgcctggggcacatcgacctggccaccccggtggcgcacatctggttcctgaagtcgctc
ccgtccaggatcggcaacctgatggacatcacgcttaaggacctcgagaaggtgctctac
ttcgaggcctacgtggtaaccgatccgaaggacaccggccttgccttcggtaccgtcttc
tctgaggaccagtaccagaaggccctcgaggaatacagctacggcttcgaggccggcatg
ggcgccgctgcgattcgcacctgcctcacctcgatggacctggaccaactctccgagcag
ctccgtatcgagatgcaggaggcgacctccgaggccaagcgcaagaagaccgccaagcgc
ctgaaggttatcgaggccttcaaaaactccggcaataagcccgagtggatgatcctcgag
tgcatcccggtcctgccgcctgagctccgtccgctggtccctctcgacggcggccgcttc
gctacgagcgacctgaacgacctgtaccgtcgcgtcatcaaccgcaacaaccgcttgaag
cgcctgatggaactgcaggcccccgaggtcatcatcaggaacgagaagcgcatgctgcag
gaggcggtcgacgcgctgttcgacaacggccgccgcggccgcgccatcgcaggcccgaac
aagcgtccgcttaagtccctctccgacatgctcaaagggaaatccggccgtttccgccag
aacctcctcggtaagcgtgtcgactactccggccgttccgttatcgtcgtcggtccggag
cttcgcctgcaccagtgcggtctgccgaagaagatggccctcgagctcttcaagccgttc
atctacaacaagctcgaggagcgcggtttcgtcaccaccatcaagagcgccaagaagatg
gtggagaaggagaagccggaagtctgggacgtgctcgaggaggttatcaaggagcacccg
gttctgctgaaccgcgccccgaccctgcaccgcttgggcatccaggcttttgaaccggtg
ctcatcgaaggaaaggcgatccagctccacccgctggtctgcaccgccttcaacgccgac
ttcgacggcgaccagatggccgtccacctccccctctcggttgagagccaggtggaggcg
cgcgtcctcatgatgtcgaccaacaacatcctgtcgccggcgcacggcaagccgatcatc
gtgccgtcgcaggacatggttctcgggatctactacatgacccgcgataagcacttcgcg
ctgggggaagggaagatcttcgcctccccggacgaggtcaacatcgcctgggacgcgggt
gagatccacctgcaggcgcgtatcaaggtcaggatgaagaacctcgtctcggacgagaag
ccgaccctgatcgagaccaccaccggccgcgtgcttttgcgcgacatcctgccggatgcc
gtgccgtatgcaaccatcaacaaggtcatgaccaagaaggagctctccaacctggtcgac
gtctgctaccgtctggccgggaacaaggagacggtcatcctcgccgacaagctgaaggcg
atcggtttccgctacgcggcgaaagccggcatctccatctcgatcaacgacatggtcatc
ccggaaggaaagcccgccatcatcaaccgcgccaccgaagaggtgcaggagatccagaac
cagtacaccgagggtctcatcaccgacggcgagcgctacaacaaggtcatcgacatctgg
gcgaaatccaccgaggacatcgccaaggagatgctggacaacctctcccgcgacaccatc
ctggacccggaagggaaggaagtgaaggttccctccttcaacgcgatccacatgatggcc
gactcgggcgcaaggggtagcgcgcagcagatccgccagctggcagggatgaggggactc
atggccaaaccttcgggcgagatcatcgagaccccgatcacggcgaactttcgcgaaggc
ctcaccgtgctccagtacttcatctccacccacggcgcacgtaagggtctggccgatacc
gcgctcaagacggcgaactccggttaccttacccgccgtctggtcgacgtcgcgcaggac
gccatcatcaccgaggccgactgcggcaccatcgacgggctcaccgtctcctccctcacc
gagggtggcgaggtgatcgagcacatcggcgaccgtatcctcgggcgcgtggctctcgac
gacatcctcgacccggtcaccggcgacgtgctggtcccggccaacgaggagatcgacgag
acgctggtggcgaagatcgaagccgccggcctcgagaaggtcaagatccgctcggtgctc
acctgcgagagccgccgcggcatctgcgccaagtgctacggccgcgacctggcacgcggg
cacctggtgaaccgcggcgaggcggtcggcgtcatcgccgcccagtccatcggcgagccg
ggcacccagctcaccatgcgtaccttccacatcggtggtaccgcttcgaggcgcgccgag
cagaccgcgttggaggcgaggaacgagggtttcgccaagttcatcaacatcaactacgtc
accaactcggaagggcaccacatcgtcatgaaccgcaacggcgagctcgccatcgtggac
gagaccgggcgcgagcgcgagaagtacggcgtcgtctacggtgcgaagatcaaggtgagc
ccgcaagagaaggtcgcccaggggcagtcggtcgccgagtgggacccgtacaccatgccg
atcctcaccgaggtcgccggccgggtcaagttcggggacgtcatcgagggcgtcaccatg
gaggagcaggtcgacgaagtcaccggtctctccaggaaggtcatcatcgagacccgcgac
accgacaagcgtccgcgcatcaccatcaaggacgagagcggcaagaccgccaagatcggc
gagaaccttctggcccgctactacctcccggtcggctccaacatcaacgtgctggaagaa
atcgaggtgaacgcaggcgacgtaatcgccaagatcccgcgcgaaaccaccaagaccaag
gacatcaccggtggtctgccgcgtgttgccgagctcttcgaagcgaggaaaccgaaggac
ttcgcggtcatcaccgagatcgacggcgtggtcgccttcggcaaggacgccaagggtaag
cgcaaggtactggtcactccggaactcggcgagcccaaggaatacctgatccccaagggg
aagcacatcagcgtccacgaaggggaccatgtccgcgccggcgaggcgctcatggacggc
tcctccaacccgcacgacatcctgcgcgtcctcggccagaaagaactggccaagtacctg
gtcgacgaggtccaggaggtgtatcgactccagggcgtcaagatcaacgacaagcacatc
gagaccatcgtacgtcagatgctgcgccgcgtcagggtcaaggatgtcggcgataccaat
ctgctcatcgacgatcagatcgagcgctgggtctttgaggaagaaaacgaaaaggcgatg
gacaaaggcgggcgtcctgcaactgctgagtcattgctccttggcataaccaaggcgtcg
ctctctaccgagtcatttatttctgctgcttccttccaggagacaacaaaagtattgaca
caagcatcgattgaaggtaaggtcgatagtcttcgcggtctcaaagagaacgtgattatg
ggccgcttgatcccggcgggaacgggattggctctttaccgcaacctacgcatggttgct
gaggagccagtaatcattccggagccagcagaaccggaagatgaagaaatctacgaagaa
gaagcctag
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