Citrifermentans bemidjiense: Gbem_1308
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Entry
Gbem_1308 CDS
T00749
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gbm
Citrifermentans bemidjiense
Pathway
gbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gbem_1308 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbm03019
]
Gbem_1308 (pnp)
03016 Transfer RNA biogenesis [BR:
gbm03016
]
Gbem_1308 (pnp)
Enzymes [BR:
gbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Gbem_1308 (pnp)
Messenger RNA biogenesis [BR:
gbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Gbem_1308 (pnp)
Transfer RNA biogenesis [BR:
gbm03016
]
Prokaryotic type
tRNA degradation factors
Gbem_1308 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_NusA_2nd
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ACH38327
UniProt:
B5EI63
LinkDB
All DBs
Position
1510921..1513011
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AA seq
696 aa
AA seq
DB search
MVHTVQAECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVN
YQEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADK
DNDPGILSMIGASAALMVSDVPFAGPIAGVKVGRVDGQFIANPTAEQEEKSDLEIVIAAS
QDAILMVEGSACEVSEDDLLEAIFFGHKAVQPVLAAQLELAKKVGTSKREIPAPVVNEAL
KARVSALAKEGMKQAVRIKTKVERHLAIDAIADETVAALSAEFEGSEKEIKGFIEDLEYD
LVREHIIKDGQRIDGRDTKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQ
RIDSLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPY
TIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDILG
DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAKTIGA
SRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIASTNKE
ACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVS
DILKEGDKVLVKCIGIDKQGKIKLSRKEALGLTFTE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggtacacaccgtacaggcagaatgctgtggcaagacaatcaccatcgaaacgggaaag
atcgcgaagcaggccagcggcgcagtcatgatcaaaagcggcgacaccatggtgctcgtc
accgccgtcgccatgaagagcgccaaggaagggcaggggttcttcccgctcaccgtcaac
taccaggagaaggcgtacgcgggcggccgcatccccgggtccttcttcaagcgcgagggg
cgtccctccgacaacgagaccctgacctgccgtctcatcgaccgcccgatccgtccgctg
ttcccggagaacttccttaacgacacccagatcatggcgaccgtggtttcggccgacaag
gacaacgaccccggcatcctctccatgatcggcgcctccgcggccctgatggtttccgac
gtccccttcgcaggccccatcgccggcgtcaaggtcggccgcgtcgacggccagttcatc
gccaacccgactgcggagcaggaagaaaagagcgacctcgagatcgtgatcgccgccagc
caggacgcaatcctgatggtggaaggttccgcctgcgaggtttccgaggacgacctgctg
gaagccattttcttcggccacaaagcggtgcagccggtcctcgccgcccagctcgagctc
gccaagaaagtcggcacctcgaagcgcgaaatcccggcgccggtggtgaacgaggcgctg
aaggcgcgcgtatccgctctcgccaaagaggggatgaagcaggcggtccgcatcaagacc
aaggtggagcgccacctggccatcgacgccatcgcggacgagaccgtcgcggcactttcg
gccgagttcgaaggctccgagaaagaaatcaaaggtttcatcgaagacctcgagtacgac
ctcgtgcgtgagcacatcatcaaggacggccagaggatcgacgggcgcgataccaagacc
atccgcgccatctccaccgaagtaagcctgctcccccgcgcccacggctccgccctgttc
acccgcggcgagacccagtccatcgtggcggcgacgctcggcacctcggtcgacgagcag
cgcatcgactcgctctacggcgactccaggaagaagttcatgctgcactacaacttccct
ccgtactccgtcggcgagaccagcttccgccttgccccggggcgccgcgagatcggccac
ggcatgctcgccgagcgcgccctgcagcaggtgctcccgaagcatgacgacttcccctac
accatcaggatcgtttccgacatcaccgagagcaacggctcctcttcgatggcgaccgtc
tgcggcggctcgctgtccatgatggacgcaggcatcccgatcaaggcgccggttgccggc
atcgccatgggcctcatcaaggaaggcgacgatttcgccatcctctccgacatcctcggc
gacgaagaccacctgggcgacatggacttcaaagtggccggtaccgccgaaggcgtcacc
gcgctgcagatggacatcaagatcggcggcgtcacccgcgagatcatgagcgcggcgctg
gctcaggccaaggcaggcaggatccacatcctgggcgagatggccaagaccatcggggca
tcgcgcggcgacctctccgccttcgcgcctcgcatcaccaccatctgggtcaaagtcgac
aagatccgcgacgtcatcgggagcggcggcaagaacatcaggagcgtcaccgaggcgacc
ggcgtctccatcgacatcgacgacaccggcaagatcaacatcgcttccaccaacaaggaa
gcctgcgacctcgccatcaagatgatcaggaacctcaccgccgaggccgaggaagggaag
ctctacatgggcaccgtcaaaaagatcatggagttcggcgccttcgtggagatcttcccg
ggaaccgacggcctggtccacgtctccgagctcgacaccgagcgcgtcaagaacgtgagc
gacatcctcaaagagggcgacaaggtcctggtcaagtgcatcggcatcgacaagcagggc
aagatcaagctgtcccgtaaagaggctctgggactgactttcaccgaataa
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