Citrifermentans bemidjiense: Gbem_2389
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Entry
Gbem_2389 CDS
T00749
Name
(GenBank) ligand-gated TonB-dependent outer membrane channel
KO
K16092
vitamin B12 transporter
Organism
gbm
Citrifermentans bemidjiense
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
gbm02000
]
Gbem_2389
Transporters [BR:
gbm02000
]
Other transporters
Pores ion channels [TC:
1
]
Gbem_2389
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
fn3
Motif
Other DBs
NCBI-ProteinID:
ACH39399
UniProt:
B5EF90
LinkDB
All DBs
Position
complement(2767906..2769753)
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AA seq
615 aa
AA seq
DB search
MQKAIAIVQSAFARAKVPLIVQMLFLIIAVSQARGDEELRSLELYNGDEAEIVSGSRSPR
PASQTAENITVVTSEDILALNAHTLADILYAVAGVQVEMIRTPGASTNFKLQGANFNHVL
VLIDNVPLNTLSENYPDIAAVPVQMIERVEIVKGAASSAWGNALGGVINVMTKSPDQERA
IGGMASGSYGKRDTADLRGELSGTVDSFGYYLSGGKLRSDGLLANNGVDKDNFYGKLLYD
LPNGGSLALTTWLSQGFNGMYQDGPVSTSQNTRYLISTLAASYQLTDHLRLEAAAVASET
EGTLFRRTDLQGVSKTLTVALDESRVGGGFKLSWLDELQRVVAGVDYEHVAAQVSSSQIR
ADILNRDADRFGVYLSDTLTLGRFAVTPSARFDRTGSGGDHFSPSFGVTYALTDNSILRG
YTATGYSLTSLNRSDSTEKVWTSQFGFESGDLPYLWVKGTLFRNDTWDVIAPTATGITKE
RQLKQGVELEAKTLPLYNTSLSVGYTFIGATLGVNGPVIKGVPKHTVNIGLRYQDPSHFR
GELTGHYVDWNEARQGGRYSDVIWDLHLRKEMHYGEKVSLEPFVSVRNLLNGHQYVYRVY
QNPGRWIELGVRCNF
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaagccattgccattgttcagtccgcttttgccagagctaaggtccctctgata
gtgcagatgctgtttttgatcattgccgtctctcaggcgaggggggacgaagagcttcgt
tctttggaactctacaatggcgacgaggccgagatagtgtcggggagcaggtccccaagg
ccggcctcccagaccgccgagaacataaccgtggtgacttccgaggacatattggcgctt
aacgcccacaccctggcggacatactctatgccgtagccggggtacaggtggagatgatc
cgcacgccgggggcctccaccaacttcaagctgcagggggccaacttcaaccacgtgctg
gtattgatagacaacgtccccctcaatacgctctcggagaattacccagacatcgccgca
gtcccggtgcagatgatcgagagggtggaaatagtgaagggagccgcgtcgtctgcatgg
ggcaacgccttgggcggggtgatcaacgtcatgaccaagtccccggatcaagagcgtgcc
atcggcggcatggcgtccgggtcgtacggcaaacgggacaccgcggacctgcggggggag
ttgagcggcacggtggacagtttcggctactacctgtccggcgggaagctgcggtcggac
ggccttcttgccaacaacggggtcgacaaggacaacttctacggcaagttgctgtacgac
ctcccaaacggcggctctctcgccttgaccacctggcttagccagggcttcaacggcatg
taccaggacggtcccgtctccaccagccagaacacgcggtatctgatcagcaccttggcc
gccagctatcagctgaccgaccacctgcgtctcgaagctgcggcggtagcttcggaaact
gagggaaccctttttcgccggacggacctgcagggcgtttccaagacattaaccgttgcc
ctggacgagtccagggtaggagggggcttcaagctctcgtggctggacgagttgcagagg
gtggtggccggggtcgattacgagcacgtggcggcgcaggtgagcagctcacagatcagg
gccgacatcctgaaccgagacgccgatcggttcggcgtctacctgagcgacacgctgacg
ctcggccgctttgccgtcacccccagtgcgcgctttgacaggacgggctcaggaggcgac
cacttcagcccaagcttcggcgttacctacgcgctcaccgacaacagcattcttcgcggc
tacaccgccacgggatacagcctcacctcgcttaaccgctcggactccacggaaaaggtc
tggacctcgcagttcggcttcgagtccggcgaccttccctacctctgggtcaagggaacc
ctgttcagaaacgacacctgggatgtcatcgcgccgactgcgaccggcattactaaggag
cggcagctgaagcagggtgtagaacttgaggcgaagacccttcctctgtacaacacctcc
ctttcggttgggtacaccttcatcggcgccaccctgggcgtcaatggcccggtcatcaag
ggggtgcccaagcacaccgtcaacatcgggctcagataccaggaccccagccactttcgc
ggagaactcaccgggcactacgtggactggaacgaggctaggcaaggaggtagatacagc
gacgtcatatgggacctgcacctaagaaaggaaatgcattacggggagaaggtttccctt
gagccgtttgtttcggttcgcaacctgttgaacggacaccagtatgtgtaccgcgtatac
cagaatcccgggcgctggatagagctgggggtaagatgcaatttctga
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