Citrifermentans bemidjiense: Gbem_2776
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Entry
Gbem_2776 CDS
T00749
Symbol
truD
Name
(GenBank) tRNA pseudouridine 13 synthase
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
gbm
Citrifermentans bemidjiense
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gbm03016
]
Gbem_2776 (truD)
Enzymes [BR:
gbm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Gbem_2776 (truD)
Transfer RNA biogenesis [BR:
gbm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Gbem_2776 (truD)
Prokaryotic type
Gbem_2776 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
DUF7508
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
ACH39780
UniProt:
B5EHY1
LinkDB
All DBs
Position
complement(3201507..3202769)
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AA seq
420 aa
AA seq
DB search
MLKEQLVLGMMLWLRKRIQGGALSIYLTAEVPGTGGTIKGSPEDFLVEEIPAYLPSGQGE
HCFAVLEKRGIATLEALRRIAKTLGVQERDLGYAGMKDAIGVTRQTVSIPRVAPDKVLAL
EIPGIKILSARMHGNKLRLGHLKGNRFVIRVRDVAQGAVKNAEAALEVMTRRGVPNRFGV
QRYGAQGNTHEIGAAMLRREFKSAVDRLIGDPAAVTDERWRQAIEAYRRGEVEESLALFP
GHFRVERELLTRLVQRPDGFERAFNSVQPRMKRLYLSAFQSSLFDLVLEKRLDSFDKVNV
GDIAFKHENGARFLVQDLAAEAPRAEAFDISPTGPMFGCTMMEPHGAQGELEREVLAAQE
LTLESFNLSGGLRMEGERRPLRVPIAGADVQQEGSDLLVGFSLPRGAYATCVMSEIMKSE
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaagagcagctggtactgggtatgatgctgtggttgcggaaacggattcaggga
ggggcattgtccatatatcttacagcagaggtcccggggaccggcggcaccatcaagggg
agcccggaagatttcctggtcgaggagatcccggcctatctgccgagcgggcagggggag
cactgtttcgcggtcctggaaaagcgcggcattgcgacgcttgaggcgctgcgccgcatc
gcgaagaccctgggtgtccaggagcgcgatttgggctacgccgggatgaaggatgccatt
ggcgtcacccgtcaaaccgtctccataccgcgcgtggcgcccgataaggtgctggcgctt
gagattccggggatcaagatcctctcggcccgtatgcatggcaacaagttgaggctcggt
cacctcaagggaaaccgtttcgtcatcagggtccgcgacgtggcccaaggcgcggtcaag
aatgcggaggccgcgttggaggtcatgaccaggcgcggggtacccaaccgtttcggggtc
cagcgctacggtgcccaaggcaacacccacgagataggggcggcgatgctgcgccgcgag
ttcaagtcggcggtggaccggctgatcggcgacccggctgcggtgaccgacgagcgctgg
cgccaggccatagaggcgtaccggcgcggcgaagtggaggaaagcctggcgcttttcccg
gggcatttccgggtcgagcgcgaactgctcacccggctagtgcagcgtccggacggcttc
gagagggccttcaactcggtgcagccgcgcatgaagaggttgtatctctccgccttccag
tcctccctcttcgacctggtgttggaaaaaaggctcgatagcttcgacaaggtgaacgtc
ggcgacatcgccttcaagcacgagaacggcgcccgtttcctggtgcaggatctggcagcg
gaggcgccgcgcgccgaagccttcgacatttcccccaccggccccatgttcggctgcacc
atgatggagcctcacggcgcgcagggcgagcttgagcgcgaggtgctggcagcgcaagag
ttaaccctggagagcttcaacctctcgggaggtctgcgtatggaaggggagcggcgccca
ttgcgggtccctatcgccggggcggatgtgcagcaggagggctccgacctgttggtcggc
ttctcgctgccgcgaggcgcctacgccacctgcgtcatgagcgagataatgaagagcgaa
tag
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