Citrifermentans bremense: GEOBRER4_01130
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Entry
GEOBRER4_01130 CDS
T07006
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gbn
Citrifermentans bremense
Pathway
gbn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GEOBRER4_01130 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbn03400
]
GEOBRER4_01130 (ligD)
Enzymes [BR:
gbn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GEOBRER4_01130 (ligD)
DNA repair and recombination proteins [BR:
gbn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GEOBRER4_01130 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DUF5960
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BCG45363
UniProt:
A0A6S6LUP4
LinkDB
All DBs
Position
complement(142289..144889)
Genome browser
AA seq
866 aa
AA seq
DB search
MGLEEYQRKRDLGTTPEPPARAGKSAKSLRFVVHKHSASHLHYDFRLELDGVLKSWAIPK
GPSLDPSVKRLAMMVEDHPYDYGDFEGVIPKGNYGAGEVIIWDAGTYAAVGAADPELGER
QLREGLRKGDLKFVLSGTKLNGEYALVRIKGDKDNTWLLIKKKDQFSSAVDVTLQDRSVV
SNLSIEEVRAGQIPRLAPAAAAEAAEPVGPVGPDPDPMPHRITPMLAGSVAEPFDDPGWL
FEIKLDGYRAIAEIENGQVQLYSRNNLSFNKRFPAIVSSLASLPVTAVLDGEVVALDEKG
RSYFQLLQNSQRTGEPNIYYFAFDLLYLDGKDLRAEPLLARKERLRSMLPEIPWVRFSDH
ITEYGKQFFELARENNLEGILAKRADSLYFAGRRSGDWLKIKIRLQQEAVICGFTQPRGS
RKGLGSLVLGVYENEELVYIGLAGGGFDEAGLKEMYAALQPLVQPESPFRQQVKTSMPVT
WVKPVLVCEVEFAEWTDENVMRQPIFLGLREDKDPRSVVREIFPAEVQSQARHEQSTDLD
ADAGEPAAEKTAAAETSSKKGGTKKGEESVVIDGQKLTLTNLDKVFWPEEGYTKGDVVDY
YRKMAPVILPYLADRPESMYRTPHGITEGGFYQKEAGDLLPPWITAKEIYSKHVDKNIRF
LVCQDEATLVYMANLGCIEINPWLSRLQQLDYPDYLVIDLDPEDIPFEKVVETAIAVREV
LESAGAESFPKTSGATGIHIYVPLGARYDYETAGGFAKLVATLAHHKVPGFTSLLRSPKE
RQKKVYLDFLQNKPGQTLAAPYSIRPRPGATVSTPLKWEEVKPGLDPRQFTIRSIGERLE
RVGDLFQGVLGPGIDIERCLDRLQNG
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggactggaagagtatcagcgcaaacgtgatctgggcacgacacccgagccgccggcc
agagctggaaagtcggcaaagtccttgcggttcgtggtgcacaagcactcggcctcgcac
ctgcattacgacttcaggcttgagctggatggcgttttgaagagctgggccatccccaag
ggcccctcgctggacccgtccgtgaaaaggctcgccatgatggtggaagaccacccgtac
gactacggcgacttcgagggggtgatccccaaggggaactacggggcaggcgaggtgatt
atctgggacgccggaacctatgcggcagtcggagcggccgacccggagctgggtgagcgg
cagctgagggaggggctgaggaagggggacctgaagttcgtgctctccggcacgaagctc
aacggcgagtacgcactggtgcgcatcaagggggacaaggacaacacctggctcttgatc
aagaaaaaggaccagttctcttcggccgtggacgtgacgctgcaggaccgttccgtggtc
agcaacctgagcatcgaagaggtgagggcgggacagattccgcggcttgcgccggctgcc
gcggcagaggccgcggaacctgtcggacctgtcggccccgaccccgacccgatgccccac
cggatcaccccgatgctggccggttccgtggccgagcccttcgacgatccgggctggctc
ttcgagataaaactcgacggctaccgcgccatcgccgagatcgagaacgggcaggtgcag
ctctactcccgcaacaacctctccttcaacaagcgctttcccgccatcgtcagctcactg
gcctccctgccggtgacggcggttctcgacggcgaggtggttgccctggacgaaaaggga
aggtcctacttccagctcttgcagaacagccagcgcaccggcgagccaaacatctactac
ttcgccttcgacctcctctacctggacggcaaggacctgcgcgccgaaccgctcctggcg
cgcaaggagaggctgcgttccatgcttcccgaaattccctgggtccgcttcagcgaccat
atcacggaatacggcaagcagttcttcgagctcgcccgcgagaacaacctggaggggatc
ctcgcgaaaagggccgacagcctgtatttcgcggggagaagaagcggcgactggctgaag
atcaaaatccggttgcaacaggaggctgtgatctgcgggttcacccagccccgggggagc
aggaaaggtctgggctctctggtgctgggggtctacgaaaacgaagagctggtctacatc
gggcttgccggggggggattcgacgaagccgggttgaaggagatgtacgccgcgctgcag
ccgctcgtccagccggaatcacctttccggcagcaggttaagacgagcatgccggtcacc
tgggtcaagccggttttggtctgcgaggtcgagttcgccgagtggaccgacgagaacgtc
atgcgccagcccatcttcctggggctgcgagaggacaaggacccacggtcggttgtgcgg
gagatctttccagccgaggtgcagtcccaggcccgccatgagcaaagcacggaccttgat
gcggatgctggcgagccggctgcagagaagaccgctgcagctgagacttcctcgaaaaaa
gggggcacgaaaaaaggtgaggagagcgtcgtcatcgacgggcagaagctcaccctgacc
aacctggacaaggtcttctggccggaggaggggtacaccaagggggacgtcgtcgactac
taccgcaagatggcgccggtgatactcccctacctggcggaccgcccggagtcgatgtac
cgcaccccgcacggcatcactgagggagggttctaccagaaggaggccggcgacctgcta
cccccttggatcacggcgaaggagatctactccaagcacgtggacaagaacatcaggttc
ctggtctgccaggacgaagcgacgctcgtctacatggccaaccttggctgcatcgagatc
aacccctggctgtcgcggctgcagcagctcgattacccggattacctggtgatcgacctg
gaccccgaggacatccccttcgagaaggtggtcgagacagccatcgccgtgcgcgaggta
ctggagagcgcgggggcggaaagcttcccgaagacctccggggccaccggcatccacatc
tacgtccccctgggagcccgctacgactacgaaacggccggcggcttcgcgaagctggtg
gcgaccctcgcgcaccacaaggtccccggcttcaccagcctcttgcgcagcccgaaagag
cgccagaaaaaggtgtacctcgacttcctgcagaacaaaccgggccagacgcttgccgcc
ccctacagcatccgcccccgccccggggccaccgtctcaacgccgcttaagtgggaggag
gtgaagccgggcctggacccgcgccagttcaccatcaggagcatcggagagcggctggag
cgggtcggcgacctgttccagggcgttctcggtcccggcatcgacattgagcgctgcctg
gaccggctgcaaaatggttag
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