Citrifermentans bremense: GEOBRER4_03410
Help
Entry
GEOBRER4_03410 CDS
T07006
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
gbn
Citrifermentans bremense
Pathway
gbn00300
Lysine biosynthesis
gbn00470
D-Amino acid metabolism
gbn01100
Metabolic pathways
gbn01110
Biosynthesis of secondary metabolites
gbn01120
Microbial metabolism in diverse environments
gbn01230
Biosynthesis of amino acids
Module
gbn_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
GEOBRER4_03410 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
GEOBRER4_03410 (dapF)
Enzymes [BR:
gbn01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
GEOBRER4_03410 (dapF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Pro_racemase
RGM_C
AAA_7
Motif
Other DBs
NCBI-ProteinID:
BCG45591
UniProt:
A0A6S6M1I9
LinkDB
All DBs
Position
complement(415931..416767)
Genome browser
AA seq
278 aa
AA seq
DB search
MKFTKMQGAGNDYVYVNCFEEVVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVADVRMRM
FNSDGSESEMCGNGIRCVAKYAYDHGIVAKKEITAETGAGILTLQLFTGADGKVEKVRVN
MGPPRLTRKEIPMLGEPDERVVNVPLNVLHSTFNITCASMGNPHCVIFVDDVDAFQVEKY
GPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAACVLNGLTE
KRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFTGEIDV
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcacaaagatgcagggtgcaggcaacgactacgtgtatgtcaactgttttgaa
gaggtggtgcacgaccctgccgccgtggcgataaaagtctccaaccgcaacttcggcatc
gggtccgacgggctgatcctgatcatgccgagcgaggtggccgacgtaaggatgcggatg
ttcaattcggacggctccgaaagcgagatgtgcggcaacggtatccgctgcgtggcgaaa
tacgcctacgaccacgggatcgttgcgaaaaaggagatcacggcggaaaccggcgccgga
atcctgacactgcagcttttcaccggagccgacggcaaggtcgaaaaggtgcgggtgaac
atggggccgccgaggctgaccaggaaggagatccccatgctgggagagccggacgagcgg
gtggtcaacgtgccgctcaacgtactccactccaccttcaacatcacctgcgcctcgatg
gggaacccgcactgtgtcatcttcgtggacgacgttgacgcgttccaggtggagaagtac
ggccccctgatcgagaatcacgagctgttcccgcgccgcaccaacgtggaattcgtccag
atcgtatcccgcaccgaggtgcgacagcgcacctgggagcgcggcgccggcgaaacgctt
gcctgcggcaccggctccagcgccgtcaccgccgcctgcgtcctgaacgggctcaccgag
aagcgcatcctgaaccacttgaccggcggcgacctggagatggagtggggcgaggacggc
aacatctacatgaccggccctgcagtcgaggtcttcactggggaaatcgacgtataa
DBGET
integrated database retrieval system