Citrifermentans bremense: GEOBRER4_09230
Help
Entry
GEOBRER4_09230 CDS
T07006
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gbn
Citrifermentans bremense
Pathway
gbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEOBRER4_09230 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbn03019
]
GEOBRER4_09230 (rhlE-2)
Enzymes [BR:
gbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GEOBRER4_09230 (rhlE-2)
Messenger RNA biogenesis [BR:
gbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEOBRER4_09230 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
Helicase_RecD
AAA_22
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BCG46173
UniProt:
A0A6S6LWZ8
LinkDB
All DBs
Position
1091588..1093054
Genome browser
AA seq
488 aa
AA seq
DB search
MDFKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVITGQDVLGLAQTGTGKTAAFGLPML
HRLVQEERGHVRGLVLAPTRELAEQINEALNGMGKQTRLRSVTVYGGVNINTQIKKLKEG
AEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLM
FSATMPDDIRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE
SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA
RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYMVRSIEKVLGT
KIERRRIEGFDYAVPAPQKDTEFARPPREPQRRKDGAKPGAGKPAATKVGAKPGSAKPAT
APGGRRSVPMPVIGAKATEPGGRSATGRPAEGNGASAGGREGVGGSGKRHQHPGGNRPAN
HAARRSGR
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
gtggatttcaaacagtttaatttgcaccccaaggtccaggcaggcatcgaggccatgggg
tacgtcaccccgacccccatccagttgcaggcgatcccgtcggtcatcaccggccaggac
gtactcggcctggcgcagaccgggaccggaaagaccgccgctttcggccttcccatgctg
caccgcctggtgcaggaagagcgcgggcatgtccgcggcctggtcttggcccccacccgt
gagctcgccgagcagatcaacgaggccttgaacggcatggggaagcagacgcgcctgaga
agcgtcaccgtctatggcggggtcaacatcaacacccagatcaagaaactaaaggaaggg
gccgaaatcgtggtcgcctgcccgggtcgccttctggaccacatctcccaggggaccatc
gacctctccagggtcgagatcctggtgctggatgaggccgaccagatgttcgacatgggc
tttctccccgacgtgaggaagatcctcagggcgctccccggcaagaggcagaacctgatg
ttctccgccaccatgcccgacgacatccgcaggctggcccacgagatcctgcgcaacccg
gtcacggtgcaggtgagccgcaccgctccggcagcgaccgtttcccatgcgctctacccc
gtgggacagcacctgaagaccccgcttctcttcgagatgctgaagcataccgacaccgag
agcgtgctcatcttcaccaagaccaagcaccgcgcgaaaagggtaggagagcagctggag
aaggcggggtacaaggcgacctcactgcaggggaacctttcccagaacaggagacaggcg
gcgctcgacggcttcagggacggcaccttccagatcatggtggcaacggacatcgccgcc
cgcggcatcgacgtctcgctcatctcccacgtcatcaactacgacatccccgacaccccg
gaagcctacacccacaggatcggccggaccggccgcgccgcgaagaccggcgacgccttc
accatggtgacatcggaagacgactatatggtgcgcagcatcgaaaaggtgctgggtacg
aagatcgagcgccggcgcatcgaggggttcgactacgcggtccccgcgccgcaaaaggac
accgagttcgcccggccgccccgcgaacctcagcgccgcaaagacggcgccaagccgggt
gccgggaaacccgccgcaaccaaggtgggcgcaaagccaggctccgccaagccggcgaca
gccccaggcggcaggaggagcgttcccatgccggtaatcggcgctaaagcgacggagccc
ggtggtcgcagcgccaccggccgccctgccgaggggaatggtgcttcggctggcggacgt
gagggcgtgggcgggagcgggaaaaggcatcagcatcccggcggcaaccgccccgccaac
cacgccgcccgccgcagcggcaggtag
DBGET
integrated database retrieval system
