Citrifermentans bremense: GEOBRER4_14470
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Entry
GEOBRER4_14470 CDS
T07006
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gbn
Citrifermentans bremense
Pathway
gbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEOBRER4_14470 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbn03019
]
GEOBRER4_14470 (rhlB)
Enzymes [BR:
gbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GEOBRER4_14470 (rhlB)
Messenger RNA biogenesis [BR:
gbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEOBRER4_14470 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
AAA_19
CMS1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BCG46697
UniProt:
A0A6S6LXB9
LinkDB
All DBs
Position
complement(1669772..1671223)
Genome browser
AA seq
483 aa
AA seq
DB search
MKFTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF
TKLLSQKKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRDA
LKAGADIVIGTPGRLIDYLKQKVYSLKDIEALVIDEADRMFDMGFIADLRFILRRLPPYD
KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKEKFPLLLGL
LRKMGMERTMIFVNTKREAEYLQDRLNANEFPCRVISGDVEQRKRMKILADFKEGALPIM
IATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFYIEP
IEDFIKQKIPTEWAEDDMFVHDYKRTKPRPRTELKPHGKGGKPGDRGRSGEKGKPAGRSR
SASGSSKPAAGEKKVAAEKPEAAATAGEATGAEAAKRKRPRRRKPKQSAEGAQSNQPSQP
DQP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcaccgagctgcagataccggcggaggtccaaaaagggatcgacgaaacaggt
ttcacccaatgtacaccaatccaggaaaaggcacttcccctggctctcaccgggaaggac
gtcgcagggcaggcacagaccggcaccggcaagaccgccaccttcctcatctccatcttc
acgaaactcctcagccagaaaaaaaccggcggcgaacaccatcccagggcgctcatcctg
gcccctacccgtgaactggtggtccagatcgaaaaggacgcccaggccctcggcaaatac
accggcttcaacatccaggcgatctacggcggcgtcgactacatgaagcagcgcgatgcg
ctgaaggcgggcgccgacatcgtcatcggcaccccggggcgcctcatcgactacctgaaa
cagaaggtctattccctgaaggacatcgaggcgctggttatcgacgaggcggaccgcatg
ttcgacatggggttcatcgcggacctccgcttcatcctgagaaggctccccccctatgac
aagaggcagaacctcctcttctccgcgacgcttaacacccgtgtcatggagctcgcctac
gagttcatgaacatgccggagaaggtctccgtcacccccgagcagatgaccgccgagcgc
gtggagcaggtgctctatcacgtctcgcgcaaggagaagttcccgctgcttttgggcctg
ctgagaaagatgggaatggagcggaccatgatcttcgtgaacacgaagcgtgaagccgaa
tacctccaggaccgtctgaacgcaaacgagtttccgtgccgtgttatctcgggagacgtg
gagcagagaaagcggatgaagatcctggccgacttcaaggaaggggcactccccatcatg
atcgccaccgacgtcgcctcccgcggcatccacatcgagggggtctcgcacgtcatcaac
tacgacctgccccaggactgcgaggactacgtgcaccgcatcggcaggaccgcccgcgcc
ggcgccgaagggatggcgatctcgtttgcggacgaggacggggccttctacatcgagccc
atcgaggacttcatcaagcagaagatccccaccgagtgggccgaggacgacatgttcgtc
cacgactacaagaggacaaagccgcgcccccgcaccgagttgaaacctcacggcaagggg
ggcaagcccggcgacaggggcaggtccggcgaaaaggggaaaccggcaggccgtagcagg
tccgcttcggggagcagcaagcccgcggcaggcgagaagaaggttgccgccgagaagccc
gaggctgccgcaacggcaggagaagcaaccggagccgaggcagcgaagcgcaagaggccg
cgccgccgcaagccgaagcagagtgccgagggtgcacaatccaaccagccgagccagccc
gatcagccgtga
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