Citrifermentans bremense: GEOBRER4_24880
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Entry
GEOBRER4_24880 CDS
T07006
Symbol
yhaM
Name
(GenBank) HD family phosphohydrolase
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
gbn
Citrifermentans bremense
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbn03019
]
GEOBRER4_24880 (yhaM)
Messenger RNA biogenesis [BR:
gbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GEOBRER4_24880 (yhaM)
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GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Cas3_HD
HDOD
Motif
Other DBs
NCBI-ProteinID:
BCG47738
UniProt:
A0A6S6M254
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All DBs
Position
complement(2868361..2869521)
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AA seq
386 aa
AA seq
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MKKKCVAEIKDRDLVEAVFLVKEKIVAMAKNGKPYLTLKLMDKSGEVDAKVWDNADQVGA
LFDRNDFLSVRAKASVYLGKMQLIVSELKKVPEETVDLADFLPETNRDINSMVEELHALI
AGVKDPDLSRLLSSFFHDPELLAQYRVAPAAKGMHHVYLGGLLEHSLAVAKLVDAMVPLY
PGLNRDLLIAGALLHDVGKVREMTYLRCFDYSDEGKLIGHITIGAEMLHERITALPGFPA
ELAMLLKHMILSHHGQYEYGSPKRPKTLEATILNYLDDLDSKINGIRTHIRKEPDNPSRW
TSYHRLYDRYFFKENGLFEEEQDLAPEACLEPSELLPQTVAAPAPPLAGAPEQGAPRRER
TDAPRGGQERKSFSNNPFAALKNGRE
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaagaaatgcgttgccgagataaaggaccgcgacctggtggaggcggtcttcctg
gtcaaggagaagatcgtggccatggcgaagaacggcaagccgtacctcaccctgaagctt
atggacaaaagcggcgaggtcgacgccaaggtctgggacaacgcggaccaggtgggcgcg
ctcttcgaccgcaacgactttctctccgtgcgcgccaaggcgagcgtctacctgggcaag
atgcagttgatcgtctcggagctgaagaaggttcccgaggagacggtggatctggccgac
ttccttccggaaacgaaccgggacataaactccatggtcgaggagctgcacgctctcatc
gccggggtgaaggacccggacctttccaggcttttgtcctccttcttccacgaccccgaa
ctcctggcccagtaccgcgtagcgccggcggccaaggggatgcaccacgtctacctgggg
gggcttttggagcactcgcttgccgtggcgaagctggtcgacgccatggtcccgctctac
cctgggctgaaccgcgacctcctgatcgcgggcgcgcttttgcacgacgtggggaaggtg
cgcgagatgacctacctgcgctgcttcgactactccgacgaggggaagctgatcggccac
atcaccatcggggccgagatgctgcacgagcggatcacggcgctcccgggctttcccgcc
gagctcgccatgctcttgaagcacatgatcctgtcgcaccacggccagtacgaatacggc
tcccccaagcgccctaaaacgctggaggcgaccatcctcaactacctggacgaccttgac
tccaagatcaacggcatcaggacccacatccgcaaggagccggacaacccctcgcgctgg
acctcgtaccaccgcctctacgaccgctacttcttcaaggagaacggcctcttcgaggag
gagcaggatctcgcccccgaggcgtgcctggagccgtccgagcttttgccgcagacggtg
gcggccccggcgccgccactggcgggcgcgccggagcagggggcgccgcgccgtgaacgc
acggacgctccccggggcggccaggagcgcaagagcttcagcaacaaccccttcgccgcg
ctgaaaaacggcagggaataa
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