Citrifermentans bremense: GEOBRER4_28180
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Entry
GEOBRER4_28180 CDS
T07006
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gbn
Citrifermentans bremense
Pathway
gbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEOBRER4_28180 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbn03019
]
GEOBRER4_28180 (pnp)
03016 Transfer RNA biogenesis [BR:
gbn03016
]
GEOBRER4_28180 (pnp)
Enzymes [BR:
gbn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GEOBRER4_28180 (pnp)
Messenger RNA biogenesis [BR:
gbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GEOBRER4_28180 (pnp)
Transfer RNA biogenesis [BR:
gbn03016
]
Prokaryotic type
tRNA degradation factors
GEOBRER4_28180 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
BCG48068
UniProt:
A0A6S6M304
LinkDB
All DBs
Position
complement(3265533..3267623)
Genome browser
AA seq
696 aa
AA seq
DB search
MVHTVQAECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVALKSAKEGQGFFPLTVN
YQEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADK
DNDPGILSMIGASAALMVSDVPFAGPIAGVKVGRVDGQFVANPTAEQEEKSDLEIVIAAS
QDAILMVEGSASEVSEDDLLEAIFFGHKAVQPVLAAQLELAKKVGTPKREIPAPVVNEAL
KARVAALAKEGMKQAVRIKTKVERHLAIDAIADETVAALATEFEGSEKEIKGFIEDLEYD
LVREHIIKDGQRIDGRDTKTIRNISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQ
RIDSLYGDSRKKFMLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPY
TIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDILG
DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAKTIAA
PRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVSIDIDDTGKINIASTNKE
ACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVS
DILKEGDKVLVKCIGIDKQGKIKLSRKEALGQTFTE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggtacacaccgtacaagcagaatgctgtggcaagacaatcacaatcgaaaccggaaag
atcgcgaagcaggcaagcggcgcggtcatgatcaaaagcggcgacaccatggtgctcgtc
accgccgtcgccttgaagagcgccaaggaagggcagggcttcttcccgctcaccgtcaac
taccaggagaaggcttacgcgggcggccgcatccccggctccttcttcaagcgcgaaggt
cgtccctccgacaacgagaccctgacctgccgtctcatcgaccgcccgatccgcccgctg
ttcccggaagggttcctgaacgacacccaggtcatggcgaccgtggtttcggccgacaag
gacaacgaccctggcatcctctccatgatcggcgcctccgcggccctgatggtctccgac
gttccctttgcaggtcccatcgccggcgtcaaggtggggcgtgtcgacggccagttcgtc
gccaaccccaccgctgagcaggaggaaaagagcgatctcgagatcgtgatcgccgccagc
caggacgcgattctgatggttgaaggttccgcctccgaggtttccgaggacgacctgctg
gaagccatctttttcggccacaaagcggtgcagccggtcctcgcggcccagctggaactt
gccaagaaggtcggcaccccgaagcgcgaaatcccggcgccggtggtgaacgaggcgctc
aaggcgcgcgtcgccgctttggccaaagaggggatgaagcaggcggtccgcatcaagacc
aaggtcgagcgtcatctggccatcgacgccatcgccgacgagaccgtggcggcgcttgcc
accgaattcgaaggctccgagaaggagatcaaggggttcatcgaagacctcgagtacgac
ctcgtgcgtgagcacatcatcaaggacggccagaggatcgacggccgcgacaccaagacc
atccgcaacatctccaccgaagtaagcctgctcccccgcgcccacggctccgccctgttc
acccgcggcgagacccagtccatcgtggctgcgacactcggcacctcggttgacgagcag
cgcatcgactcgctctacggcgattccaggaagaagttcatgctgcactacaacttcccc
ccgtactccgtcggcgagaccagcttccgtctcgctccggggcgccgcgagatcggccac
ggcatgctcgccgagcgcgccctgcagcaggtgctccctaagcatgacgacttcccctac
accatcaggatcgtctccgacatcaccgagagcaacggctcctcctcgatggctaccgtc
tgcggcggttcgctgtccatgatggacgcaggcatcccgatcaaggctccggtggccggt
attgccatgggcctcatcaaggaaggcgacgacttcgccatcctctccgacatcctcggc
gacgaagatcacctgggggacatggacttcaaagtggcaggtaccgcagaaggcgtcacc
gcgctgcagatggacatcaagatcggcggcgtaacccgcgagatcatgagcgccgccctg
gcgcaggccaaagcaggtaggatccacatcctgggcgagatggccaagaccatcgccgca
ccgcgcggcgacctctccgccttcgcgccgcgcatcaccaccatctgggtcaaggtcgac
aagatccgcgacgttattggttccggcggcaagaacatccggagcgtcaccgaggcgacc
ggggtttccatcgacatcgacgacaccggcaagatcaatatcgcttccaccaacaaggaa
gcctgcgacctcgccatcaagatgatcaggaacctcaccgccgaggccgaagaagggaag
ctctacatgggcaccgtcaagaagatcatggaattcggcgccttcgtcgagatcttcccg
ggaaccgacggtctggtccacgtctccgagctcgacaccgagcgcgtcaagaacgtgagc
gacatcctcaaagaaggggacaaggtcctggtcaagtgcatcggcatcgacaagcagggc
aagatcaagctctcccgcaaagaggctctgggtcagactttcaccgaataa
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