Citrifermentans bremense: GEOBRER4_28950
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Entry
GEOBRER4_28950 CDS
T07006
Symbol
recD2
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gbn
Citrifermentans bremense
Pathway
gbn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GEOBRER4_28950 (recD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbn03400
]
GEOBRER4_28950 (recD2)
Enzymes [BR:
gbn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GEOBRER4_28950 (recD2)
DNA repair and recombination proteins [BR:
gbn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GEOBRER4_28950 (recD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
SH3_13
UvrD_C_2
AAA_11
HHH_5
Viral_helicase1
Helicase_RecD
PIF1
nSTAND3
RsgA_GTPase
HHH_2
AAA_22
cobW
AAA_16
SLFN-g3_helicase
MeaB
NTPase_1
AAA_5
AAA
T2SSE
AAA_28
HHH
AAA_24
DUF4926
ABC_tran
UvrD-helicase
NACHT
MMR_HSR1
DEAD
MoCF_biosynth
AAA_29
AAA_14
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
BCG48145
UniProt:
A0A6S6M9L1
LinkDB
All DBs
Position
complement(3352565..3354745)
Genome browser
AA seq
726 aa
AA seq
DB search
MKEAPPTENVERLAGSLERVTFHSEETGFCVLRVKVAGQRDLVTVTGAAASVTPGEYLEC
TGSWHNDRTHGMQFKAGHIQVVPPTTLEGIEKYLGSGMVHGIGHHFAKVLVKSFGEAVFD
VIEKHPERLLELPGIGRKRMESVAATWVEQKAIREIMVFLQSHGLGTARAVRIYKSYGNE
AIFKVTENPYRLALEIHGIGFKTADALAAKLGIPPDSMIRAQAGVRHVLQEMSAGGHCAA
LREELAESAARLLEIPQPVIESAIEAELAEENLVADQISGSPCLFLAPLYKAEVGVASGI
SRLSAGTPPWGGIVAEEAIPWVESQKGITLSASQRDAIRLALKSKVVVVTGGPGVGKTTL
VNSILGVIGRKPLRVTLCAPTGRAAKRLTESTGMEAKTIHRLLEFDPQSFGFKRGRENPL
HTDLLVIDEASMVDVVLMNKLLPAIPDHAGLIIVGDVDQLPSVGPGCVLSDIIESGAVPT
VRLTEIFRQAAGSRIIVNAHRINRGELPLKNEGKELADFYFIPAATPEDIHDKLLQVVRE
RIPKRFGLDPVREVQVLTPMNRGGLGTRSLNAELQGVLNGGAAPKVERFGTSFAPGDKVI
QTVNNYEKEVFNGDIGRIVEIRPEEGALTVDFEDRLVEYQFAELDEVSLAYATSIHKSQG
SEYAAVVIPLAMQHYTMLERNLLYTAVTRGKKLVVVIGEAKALAMAVQNHRSHRRLTKLA
GRIALT
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggcacccccaacagaaaacgtggagcggctcgccggctcgctggagcgggtc
accttccacagcgaggagaccgggttctgcgtgctgcgggtgaaggtggccgggcagcgc
gacctggtgacggtgaccggcgccgccgcctcggtgacgccgggagagtaccttgagtgc
accggctcctggcacaacgaccggacccacggcatgcagttcaaggccgggcacatccag
gtggtccccccaaccacgctggaggggatcgagaagtaccttggaagcggcatggtgcac
ggcatcgggcatcacttcgccaaggtgctggtgaaatccttcggcgaggcggtcttcgac
gtcatcgagaaacacccggagaggcttcttgagctcccggggatcggccgcaagcggatg
gagtccgtcgccgccacctgggtggagcagaaggcgatccgcgagatcatggtgttcctg
cagtcccatggccttgggaccgcccgcgcggtgcggatctacaagagctacggcaacgaa
gcgatcttcaaggtgacggagaacccgtatcggctggccctggagatccacggcatcggc
ttcaagaccgccgacgccttggctgcgaagctcgggatcccccccgattccatgatccgc
gcccaggccggggtgcgtcacgtgctgcaggagatgtcggccggcggccattgcgccgcg
ctgcgcgaagagctggccgagagcgcagccaggctgctggagatcccgcaaccggtgatc
gaatccgccatcgaggcggaactcgccgaggagaacctggtcgcggaccagatctccggc
tccccctgcctcttcctcgcgccgctctacaaggccgaggtcggcgtcgcctcagggatt
tcccgccttagcgccggcacccctccctggggcggcatcgtcgcggaagaggcgatcccc
tgggtggagagccagaaggggatcacactctccgcctcgcagagggacgccatccgcctc
gccctcaagagcaaggttgtcgtggtgaccggcgggccgggggtggggaagaccacgctg
gtcaacagcatcctgggcgtcatcggcagaaagccgctccgggtcaccctctgtgcgccg
acgggccgcgccgcgaagcgcctcaccgagtcgaccggcatggaggcgaagaccatccac
cggctgctggaattcgacccgcagagcttcggcttcaagcgcggcagggagaatccgctg
cacaccgacctcctggttattgacgaggcgtccatggtcgacgtcgtgctgatgaacaaa
ctcctccctgccatcccggaccatgcgggtctcatcatcgtcggggacgtggaccagctc
ccgtcggtggggcctgggtgcgtcctctccgacatcatcgagtccggcgcggtcccgacc
gtgcggctcaccgagatcttccggcaggccgcgggctccaggatcatcgtcaacgcccac
cggatcaaccggggcgagctgcccttgaagaacgaggggaaggaactcgccgacttctac
ttcatcccggcggcgactcccgaggacatccacgacaagctcctgcaggttgtcagggag
cgcatccccaagcgcttcggcttggatccggtgcgcgaggtccaggtgctcacgccgatg
aaccggggcgggctggggaccaggtcgctgaacgccgagttgcagggggtgcttaacggc
ggggctgcgcccaaggtggagcgcttcggcaccagcttcgctcccggcgacaaggtgatc
cagacggtgaacaactacgagaaggaggtcttcaacggggacatcggccgcatcgtcgag
atccggccggaagaaggcgccctcaccgtggacttcgaggaccggctggtagaatatcaa
tttgccgaactggacgaggtgagcctcgcttacgccaccagcatccacaaaagccagggg
tcggaatacgcggcagtggtgatcccgcttgccatgcagcactacaccatgctggagcga
aacctcctttacaccgccgtcacccgcggaaagaagctcgtggtcgtgatcggcgaggcg
aaggcgctcgccatggcggtgcagaaccacagatcccaccgtcgcctgaccaagctggcg
ggaaggatagcacttacgtag
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