Citrifermentans bremense: GEOBRER4_35830
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Entry
GEOBRER4_35830 CDS
T07006
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gbn
Citrifermentans bremense
Pathway
gbn03420
Nucleotide excision repair
gbn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GEOBRER4_35830
03430 Mismatch repair
GEOBRER4_35830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbn03400
]
GEOBRER4_35830
Enzymes [BR:
gbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GEOBRER4_35830
DNA repair and recombination proteins [BR:
gbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GEOBRER4_35830
MMR (mismatch excision repair)
Other MMR factors
GEOBRER4_35830
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_30
UvrD_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BCG48833
UniProt:
A0A6S6M568
LinkDB
All DBs
Position
complement(4107837..4109795)
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AA seq
652 aa
AA seq
DB search
MTGTVVHEGNDRDAGVVEEICGYLTEQPPQSFFLFAGAGSGKTRTLVEVLRRLTGVVPHA
SGGRLANRLRLYGRSIRVVTYTKNAVAVISGRLGSNDLVAVSTIHSFCWELIGGFDEDIR
EALIADKAVQLEEAKTKAAAKVRGISDTDRRKFAEIEAEIEALKGVPTFIYHPDKDTYGE
GAMQHGQVLDATAWLLLNRPTLRTILQDRHPIILIDESQDTMKSVLDALMKLAEPRGSGL
TLGLLGDHRQRIYMDGHSDLPGLVPPGWAKPELKMNHRSQQRVVQLINKIWAAKLAGRTQ
PSSGIEQHHRTEKTGGTVRLFIGRTSLSTPEKRQKEAWVALQMQQAAQSDAWATSAGYQS
LALEHKLVAARGDFLNVYTAITLIDPNAAAPSGRGENTGPSVARLVLQDLAQLAACVAAD
GSVNDFAATEVLRRAGCLDQLPADADQRIARTEEMHEALAAFGSACVKPDATVAEVVAPI
IKAQVFKVDSRLLQQFADQTPPPAAPIPRQETETDDARRRRGWCALFKAPWAELERYRRY
LAGNSELATHQVVKGSEFTHVMVVMDDDQSGGNQISYDKLFGATELGKRDLDNVQAGKET
TIDRSLRLLYVTCSRARETLALVLWAENPAEALKFARNKSDWFTAEEIVEIA
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcaccgtcgtccatgaaggaaacgaccgcgacgctggcgtcgtcgaggaaatc
tgcgggtacctgacggagcagccgccgcagagcttcttcctgttcgcgggagccggctcg
ggcaagacacgcacgctggtcgaagtgctgcgccggctgaccggcgtcgtgccgcacgcg
agcggtggaaggctggccaaccgcctgcgcctctatggtcggtctatccgcgtcgtcacg
tatacgaagaacgccgttgcggtcatcagcggccggctgggcagcaatgacctggtcgcc
gtctcgaccatccactcgttttgctgggaactgatcggcggctttgacgaggacatccgc
gaggcgctcattgccgacaaagcggtgcagctcgaagaggccaaaaccaaggcagcggcc
aaggtgaggggcatcagtgatacagaccgcaggaaattcgccgagatcgaagcggagata
gaagccctgaagggcgtgccgacattcatctaccaccccgacaaggacacctacggtgaa
ggtgccatgcagcacggccaagtgctggacgccacggcttggctgctgttgaaccggccg
acgctgcgaaccattctgcaggatcgccaccccatcatcctgatcgacgagtcccaggac
acgatgaaatcggtgctggacgcgctaatgaaactggcggagcccaggggcagcggcctc
acgctcggcctcctcggggaccaccgccagcgcatctacatggacgggcattccgacctg
cccggcctcgtgcctcccggctgggccaagccggagttgaaaatgaaccaccgcagccag
cagcgagttgttcagctcatcaacaagatatgggcggcgaagctggcgggtcgtacacaa
ccctcctcaggcatcgaacagcatcaccgcaccgagaagaccgggggcacggtgcgcttg
ttcatcggacgtacatccctctcgacaccagaaaagcgtcagaaggaagcctgggtcgca
ttacagatgcagcaggcggcccagagcgatgcgtgggcgacgtctgccggctatcagtcg
ctcgcgctggagcacaaactggttgcggcgcgcggcgacttcttgaatgtctacacggcg
ataacgctcatcgacccgaacgccgcggcaccgtcgggcaggggtgagaacacggggcct
tcagtcgctcggctggtgcttcaggatctcgcgcagctcgcggcctgcgtggctgcggac
gggtccgtcaacgacttcgcggccacagaggtgctcagacgcgccggctgccttgatcaa
ctcccggctgacgccgatcagcgtatcgcgcggacagaggaaatgcatgaggccctcgcg
gcgtttggctcggcgtgcgtcaaaccagacgctaccgtcgccgaggtcgtcgctcccatc
atcaaggcgcaggtgttcaaggtggactctcggctgctgcagcagtttgccgaccagacc
ccaccgccagctgcgccgattccgcgccaggaaaccgagacggacgacgcacgacggcga
agggggtggtgcgcgttgttcaaggcgccatgggccgaactggagcggtaccggcgctac
ctggccggcaactccgaactcgccacgcaccaggtggtcaaggggtcggagttcacgcac
gtcatggtggtcatggacgacgaccagtccggcggcaaccaaatctcttacgacaagttg
tttggcgcgaccgaactgggaaaacgtgatttggacaacgtccaggccggcaaagagacg
accatcgaccgaagcctgcgactgctgtacgtcacctgcagccgggcccgagaaacgctg
gcactggtgttatgggccgagaacccggcagaagcgctgaaatttgcgcggaacaagagc
gactggtttacagcggaggaaatcgtggaaatcgcttaa
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