Gordonia bronchialis: Gbro_0827
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Entry
Gbro_0827 CDS
T01102
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gbr
Gordonia bronchialis
Pathway
gbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gbro_0827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbr03019
]
Gbro_0827
03400 DNA repair and recombination proteins [BR:
gbr03400
]
Gbro_0827
Enzymes [BR:
gbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gbro_0827
Messenger RNA biogenesis [BR:
gbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Gbro_0827
DNA repair and recombination proteins [BR:
gbr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Gbro_0827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ACY20140
UniProt:
D0L3E1
LinkDB
All DBs
Position
complement(884361..886481)
Genome browser
AA seq
706 aa
AA seq
DB search
MSQAATTVEPMTAPATLTAAQQHAADAVITSLAGPGARLRDDQLTAVSALTAPGARVLVV
QATGWGKSAVYWSATAIIRAAGGGPTLIVSPLLSLMRDQVAAAHRGGLSAATLNSSNIGE
WSAIEERLRGGDLDVLLVSPERLANPGFGRRVLDALAGNLGLLVIDEAHAVSDWGHDFRP
DYRRVADVLRDLNPATPVLATTATANARVTADVAEQLGTQTLVLRGPLARKSLHLNVLDG
LSPIQRYAWVAQSLPALPGSGIVYALTVADADRLVDAIRAVHGDDIAVAAYTGQLDADRR
HELEDALLHNRVKALVATSALGMGYDKPDLGFVVHVGSPPSPVSYYQQVGRAGRALDDAV
VMLLASATDDRIWQYFATATIPDPDKMRDLITALDDADEPQSVVALEASTRFRRTRIELM
LKQLAVDGATERTPDGWVSTGTPWTYDAEHYDGIIAVRRREADIMRDYVAGRRCLMRLLT
ESLDDPQAADCGRCSVCRGRLSEGLPDAVDPQIVRSVTSVLRRSSMVLEPRKMWPGGEFG
TRGRVPAGVAAEPGRVLAHADAPEWTEVLAAARNGDEHALGELGDAAVATLSAWVRDTGM
RPDVIVSLRLTGTNLAETLAAHLRDVGRRGGGTFPVRMGDPPTDATGAVEAAYWRDHLGD
APDVAGQAVLLVVDASSSGWPITLAAARLREAGATAVLPLLIHRTV
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaggcggccactacggtggaacccatgacggcccccgcgaccctgaccgccgcc
cagcagcatgccgccgatgcggtgatcaccagtctcgccgggccgggtgcacggctgcgc
gacgaccagctcaccgcggtgtcggcgctcaccgcaccgggtgcccgggtcctggtggtc
caggccaccggctggggcaagtcggcggtgtattggtcggcgacggccatcatccgggcg
gccggcggcggtccgacgctcatcgtgtcgccgctgctctccctgatgcgcgatcaggtc
gccgcggctcatcgaggcgggttgtcggcggcgacgctgaactcgtcgaacatcggtgag
tggtcggcaatcgaggagcggttgcgcggcggggacctcgacgtgctgctggtctcgccc
gagcggctggcgaatccggggttcgggcggcgcgtgctcgatgcgctcgccgggaacctg
gggctgctggtgatcgacgaggcgcacgcggtgtcggactggggtcacgatttccgcccg
gactaccgccgcgtcgccgatgtgctgcgcgatctcaacccggccaccccggtgctcgcg
accacggccaccgcaaacgcgcgggtcaccgcggatgtggccgagcagctcggcacccag
accctggtgttgcgcggccccttggcccgaaagtcattgcacctcaacgttctcgacggg
ctctcgccgattcagcggtacgcctgggtagcgcagtcgttgccggcgctacccggatcg
gggatcgtctacgcactcaccgtcgccgacgcggaccggttggtggacgccatccgggcg
gtgcacggcgacgacatcgcggtcgccgcctacaccgggcagcttgacgccgaccgtcgt
cacgaactcgaggacgcgctgctgcacaaccgggtcaaggcgctggtcgcgacgtcggcg
ctgggcatgggctacgacaaacccgacctcggctttgtggtccacgtgggttcgccgccg
tccccggtgtcgtattaccagcaggtcggacgtgccggccgtgccctcgacgacgccgtg
gtgatgctcctggcgtcggccaccgacgaccggatctggcagtacttcgccaccgcgacc
atccccgacccggacaagatgcgcgatctgatcaccgcgctcgacgacgccgacgaaccc
cagtccgtggtcgcgctggaggcgtcgacgcgttttcgccgaacccggatcgaactgatg
ctcaagcagctcgccgtcgacggagccaccgaacgcacgccggacggctgggtgagcacg
ggcacgccctggacctacgacgccgagcactacgacgggatcatcgcggtccggcgccgc
gaggccgacatcatgcgcgactacgtcgcgggccggcgttgcctgatgcggttgctgacc
gaatcgctcgacgatccgcaggccgccgattgcggccgctgctcggtgtgccgcggccgg
ctcagcgaggggctgcccgacgccgtcgacccgcagatcgtccggtcggtgacatcggtg
ctgcgcagatcatcgatggtcctcgagccgcgaaagatgtggccgggcggggaattcggg
acgcgtggccgggttccggcgggcgtggcggccgagcccgggcgggttctggcccatgcc
gacgcaccggaatggacggaagtgctcgcggccgcgcgcaacggggacgagcatgcgttg
ggcgaactgggtgacgcggcggtggccaccttgtcggcgtgggtccgggacaccggcatg
cgtcccgacgtcatcgtgtcgctcaggttgaccggcacgaatctggccgagacgctggcg
gctcatctgcgcgacgtgggccgacggggcggcggcaccttcccggttcggatgggtgac
ccgccgaccgatgccaccggcgccgtcgaggccgcctactggcgtgatcatctcggcgac
gcccccgacgtcgccgggcaggcggtgctgctcgtcgtcgacgcgtcgtcgagcggctgg
ccgatcaccctggccgcggccaggctgcgcgaggccggggcgacggcggtgctgccgctg
ctgatccaccggacggtgtga
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