Gordonia bronchialis: Gbro_1139
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Entry
Gbro_1139 CDS
T01102
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gbr
Gordonia bronchialis
Pathway
gbr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gbr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Gbro_1139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbr03021
]
Gbro_1139
03400 DNA repair and recombination proteins [BR:
gbr03400
]
Gbro_1139
Enzymes [BR:
gbr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Gbro_1139
Transcription machinery [BR:
gbr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Gbro_1139
DNA repair and recombination proteins [BR:
gbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Gbro_1139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Sey1_3HB
Motif
Other DBs
NCBI-ProteinID:
ACY20447
UniProt:
D0L4Z5
LinkDB
All DBs
Position
1200812..1204768
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDVDLNERQQKLEQD
LAELEAEGAKADVRRKVKDGAEREMRRMRDSAQRELDALDELWDKFTKLAPRDLIIDEKL
YHQLVERYGEYFTGSMGAEAIKKLLETFDIDAEADSLRDTIRNGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLTEGAVGEYT
PATADDVERGVYSSPAEAIMAVDRGALTVQSRIKVRLTDQRPPAEIEAELFPEGWSFGQP
WDADTTLGRVLFNELLPVEYPYVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSMADVLVPPQKAEILDKYEERADGLERKFQRGALTPDERRDALVEIWKQA
TEEVGAAMEAHYPDDNPIPMIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGITTTI
AERQPDGTLIRDAHVETSTYARTLATDALDADGNVIVERGHDLGDPAIEALLAAGITQVK
VRSVLTCATGTGVCAHCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVQELFEARVPKGVAPIAEVSGRVRLEDDDRFYKITIVPDDGSEEVVIDKIS
KRQRLRVFKHDDGSERLLSDGDHVEVGQQLMEGSANPHEVLRVMGPRQVQVHLVNEVQEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDHGSTEFLPGSLVERAEFEAANRQVVAEGGEPA
AGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPAG
TGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSNDYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaactttttcgacgaactgaaaatcggcctcgccacggccgacgacatc
cacaactggtcatacggtgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgaacgctgcggcgtg
gaggtgaccaaggccaaggtgcgccgtgagcgcatgggtcacatcgagctggccgcaccg
gtcacccacatctggtacttcaagggtgtgccgagccggttgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtgatcaccgcggtcgac
gacgagctccggcacaacgagctctccactctcgaggccgagatggaggtcgagaagaag
gccgtcgccgatcagcgcgacgtcgatctcaacgagcgtcagcagaagctcgagcaggat
ctcgccgagctcgaggccgagggtgccaaggccgacgtccgccgcaaggtcaaggacggc
gccgagcgcgagatgcgccggatgcgcgactccgcccagcgtgagctggacgcgctcgac
gagctgtgggacaagttcaccaagctcgccccgcgcgacctgatcatcgacgagaagctg
tatcaccagctcgtcgagcggtacggggagtacttcaccgggtcgatgggtgccgaggcc
atcaagaagctcctcgagaccttcgacatcgatgccgaggccgattcgctgcgcgacacc
atccgcaacggcaagggccagaagaagctgcgtgcgctcaagcgactcaaggtcgtggcc
gcgttccagcagtccggcaattcgccgctgggcatggtgctcgacgccgtgccggtgatt
ccgccggagcttcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacttgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgatctc
ggtgctcccgagatcatcgtgaacaacgagaagcggatgctgcaggagtcggtggatgcc
ctgttcgacaacggtcgtcgcggccgtccggtcaccggaccgggtaaccgcccgctgaag
tcgctgagcgatctgctcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgtctc
gtcgatctcaaccaggcgcagaacatcaagtccgccaagcggatggtggagcgtcagcgt
ccggccgtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gctcctaccctgcaccgtctgggcatccaggccttcgaaccgcagctggtggagggcaag
gccattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgagtgcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgagcaacaacatcctgtcgccggcgtcgggccgtccgctggccatgccgcgtctggac
atggtgaccggcctgtactacctgaccaccctcaccgagggtgccgtcggcgagtacacc
ccggccaccgccgacgacgtcgagcgcggtgtgtactcgagcccggccgaggccatcatg
gccgtcgatcgtggtgcgctcaccgtgcagtcgcgcatcaaggtgcggctgaccgatcag
cgtccgccggccgagatcgaggccgagctcttcccggaaggctggtccttcgggcagccg
tgggacgccgacaccacgctgggtcgcgtgctcttcaacgagctgctgccggtggagtac
ccgtacgtcaacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgatctggcc
gagcggtacccgatgatcgtggtggcgcagaccgtcgacaagctcaaggacgtcggtttc
tactgggcgacccgctcgggtgtgaccgtctcgatggccgacgtgctggtgccgccgcag
aaggcggagatcctcgacaagtacgaggagcgggccgacggcctggagcgcaagttccag
cgtggtgccctcaccccggacgagcgtcgcgacgctctggtggagatctggaagcaggcc
accgaagaggtgggcgcggccatggaggcgcactacccggatgacaacccgatcccgatg
atcgtgaagtcgggtgcggcgggcaacatgacccagatccgctcgctggcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtcccatcaagtcctcgttccgc
gagggcctgaccgtggcggagtacttcatcaacacgcacggcgcccgcaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtcagc
caggacgtcatcgtgcgtgaggtggattgcggcaccgagcgtggcatcaccacgaccatc
gccgagcgccagccggacggcacgctcatccgcgatgcgcatgtggagacctccacctac
gcgcggaccctggcgaccgacgccctcgacgccgacggcaacgtcatcgtcgagcgcggt
cacgatctcggcgaccccgcgatagaggcgctgctggccgccggcatcacccaggtcaag
gtccgctcggtgctcacctgtgccaccggcaccggtgtgtgcgcgcattgctacggccgt
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggtatcatcgcggcccag
tcgatcggtgagcccggtacccagctgacgatgcgtacgttccaccagggtggcgtcggt
gacgacatcaccggtggtctgccgcgtgtccaggagctcttcgaggctcgcgtgcccaag
ggtgtcgcgccgatcgcggaggtctccggccgggtgcgcctggaggacgacgaccgcttc
tacaagatcaccatcgtccccgacgacggttccgaagaagtggtcatcgacaagatctcc
aagcgtcagcgtctgcgtgtcttcaagcacgacgacggctcggagcgtctgctctccgac
ggcgaccacgtggaggtcggtcagcagctcatggagggctcggccaacccgcacgaggtg
ctgcgcgtgatgggtccccgtcaggtgcaggtccacctggtcaacgaggtccaggaggtc
taccgcagccagggtgtgtcgatccacgacaagcacatcgagaccatcgtgcggcagatg
ctgcgtcgcgtgacgatcatcgatcacggttcgacggagttcctgcccggttcgctggtc
gagcgtgccgagttcgaggcggccaaccgtcaggtcgtcgccgagggcggcgagccggca
gccggacgtccggtgctgatgggtatcaccaaggcatcgctggcgaccgagtcgtggctg
agtgcggcgtcgttccaggagaccacgcgtgtcctgaccgacgcggccatcaacagccgc
agcgacaagctgatcggtctgaaggagaacgtgatcatcggtaagttgatcccggccggt
accggcatcaaccggtaccgcaacatccaggtccagccgaccgaggaggcgcgtgccgcg
gcgtacgcggtgccgtcctacgacgacacctactacagcccggacggcaccttcggtgct
ccggcaggggctgcggtgccgctggacgactacggtttctccaacgactaccggtag
DBGET
integrated database retrieval system
