Gordonia bronchialis: Gbro_1323
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Entry
Gbro_1323 CDS
T01102
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gbr
Gordonia bronchialis
Pathway
gbr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Gbro_1323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbr03400
]
Gbro_1323
Enzymes [BR:
gbr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Gbro_1323
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Gbro_1323
DNA repair and recombination proteins [BR:
gbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Gbro_1323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Ribosomal_S13
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
ACY20610
UniProt:
D0L5T1
LinkDB
All DBs
Position
1385003..1385890
Genome browser
AA seq
295 aa
AA seq
DB search
MPELPEVAAIADYVDSRAAGLPIRRVDVASLSVLKTADPPYTALVGRIVESVGRVGKYLV
IRTVPGADTDPEPVILLVIHLSRAGWLRWSEDLSPRPLRPGGKSPIALRVHCGLPSEGFD
VTEAGTQKRLAVWIVRDLADIDRVATLGPDVLSLSVSEFGAILAQTAGRIKNVLADQRVM
AGIGNAYSDEILHTARLSPFATAKSLTEEQVSTLYDAMRSVLADATGRLEGQTVARLKSE
KRTGLRVHARTGLPCPVCGDTVREVSFADRSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgccggagcttcccgaggtcgccgcgatcgccgactacgtcgactcgcgcgcggccggt
ctgcccatccgccgggtcgacgtcgcgtcgttgtcggtgctcaagaccgccgacccgccg
tacacggcactcgtcggacggatcgtcgaatcggtcggccgggtgggcaaatacctggtg
atccggaccgtccccggcgccgacaccgaccccgaaccggtgattctgctggtcatccac
ctgtcgcgggcgggctggctgcggtggagcgaggacctctcaccccggccgctacgtccg
ggcggcaaatcgccgatcgcgctgcgggtgcactgtggtcttccatcagaaggattcgac
gtgaccgaggcgggaacgcagaagcggctggcggtgtggattgtgcgtgacctcgccgac
atcgaccgcgtcgccaccctgggcccggacgtgttgtcgctgagcgtgtccgagttcggc
gccatcctcgcccagaccgccggacgcatcaagaacgtgctcgccgatcagcgtgtcatg
gccggtatcggcaacgcctactccgacgagatcctgcacaccgcccgactctcaccgttc
gcgacggccaagtcgctcaccgaggaacaggtgagcaccctctacgacgcgatgcgcagt
gtgctcgccgacgcgaccggccggctcgaggggcagacggtggctcggctcaagtcggag
aagcggaccggtctgcgggtccacgcccgcaccgggttgccgtgcccggtctgtggggac
accgtacgcgaagtgtcttttgccgaccggtccttccagtactgtccgacctgccagacc
ggtggcaaggtgctggccgaccgccgtatgtcgcggctgctgaagtag
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