KEGG   Gordonia bronchialis: Gbro_1802
Entry
Gbro_1802         CDS       T01102                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
gbr  Gordonia bronchialis
Brite
KEGG Orthology (KO) [BR:gbr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gbr03400]
    Gbro_1802
Enzymes [BR:gbr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Gbro_1802
    5.6.2.6  RNA 3'-5' helicase
     Gbro_1802
DNA repair and recombination proteins [BR:gbr03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Gbro_1802
SSDB
Motif
Pfam: DEAD_assoc DEAD Helicase_C AlkZ-like ResIII Lhr_WH DUF6406 AAA_22 AAA_25
Other DBs
NCBI-ProteinID: ACY21060
UniProt: D0L8P3
LinkDB
Position
complement(1878441..1883075)
AA seq 1544 aa
MARTAPVLQRFTAPTRRWFTGAFTAPTPAQVGAWNSIADGENTLVIAPTGSGKTLSAFLW
ALDRLAATPDRAAGTRVLYISPLKALAVDVERNLRAPLTGITRAAQELGEPEPNITVGLR
SGDTAAAARRLLAKAPPDILITTPESLYLMLTSSVRETLRTVDAVIVDEVHAVAGTKRGT
HLALSLERLDDLLETPAQRIGLSATVRPPEVVADFLAGSRPCRVVRPPAAKTFDLRVDVP
VPDMANIPPPAEDTADDLDDAFSPTAGSLWPHVEASIVDAIEANRATIVFANSRRLAERL
TARLNEIYAQRSGVPVQAAANPGVPGGAPAHIMASGAAGGAPTTLARAHHGSVSKEQRAE
IEDDLKSGRLRCVVATSSLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEISQG
VLYPKHRTDLVHCTVAVERMRAGAIEELRIPKNPLDVLAQHTIAAAAMDDLDVDQWFDVI
RRAAPYRELAREVYVSTLDLISGRFPSDEFAELRPRVTWDRDANTLVGRRGAQRLAVTSG
GTIPDRGLFGVFMVGEKSARVGELDEEMVYESRVGDVFALGATSWRIEDITHDRVLVTPA
FGQPGRLPFWVGDAVGRPAELGAAIGKFTGAIADPQELDRQATELGLTEYARDNLAALIA
EQREATGHLPTDRTLVIERFRDELGDWRVILHSPYGLRVHAPWASAISARLQETLGLAGA
TTASDDGIIVRLPDTEDEPPGAAVFVIDPDDIEQMVTDALAESSMFASRFRECAARALLL
PRRDPGRRAPLWQQRQRSAQLLSVASQFPDFPIVLEAVRECLQDVYDLPALTDLLRRIST
RRVRLVETETPEPSPFAASLLFGYVGAFMYSDDAPLAERRAAALSLDTSLLAQLLGRVDL
RELLDPGVIAAVIARLQRLDPSRQARDAEDIVDLLRWLGPLTTEEVAARYQGDDAAAVLA
DLHRAGPIISVTHQGRPLWAAVEDTARLRDALGVPAPLGVPAAYTDPVPDPVTDLVHRYA
RTHGPFTLTEAAESLGMAVAVVRDTLVRLAAQRKVVEGDFLPAAADDAHPTTQWCHADVL
GQIRRGSLAASRADVAPVDAATLGRFLGGWHHVTPAERLSGVDGVATVLDQLAGYPLPAS
AWESLILPARVADYSPAMLDELLSSGEVVWSGHGRIGGADGQIAFHPADLLPVTLEPPDE
IDLTAIHAALLAVLTPGGALRFAQLTDAASETLSAAGAAVPSTADIESALWDLVWAGQVA
NDSFAAVRALLRPDRRSVGRGAGSRPTPAHRGRARAPRIRPQRLSTRFLSEHATGRPSSP
TTTGRWFLLARDDLDPTAATQALCEQLLVRYGVVTRGSVATEGVPGGFARVYKALSVFED
SGVVRRGYYVDGLGGAQFARPTTVDELRRHAVDADSAAPAVVLAATDPANPYGAVLDWPE
TSAEDSGHRPGRKAGALVVLLAGEPVLFVERGGKTVLTFSSDADRLRTAAGALADAVRAG
RLSRLTIDQVDSRPVLGSEMAPVLVDAGFATTPRGVRLRYGLHA
NT seq 4635 nt   +upstreamnt  +downstreamnt
atggcccgaaccgcgccggtactccaacgattcaccgctcccacccggcggtggttcacc
ggtgcgttcacggcgcccacccctgcccaggtcggcgcgtggaactccatcgccgatggg
gagaacacgctggtcattgcgcccaccggctcgggaaagacgttgtcggcgttcctgtgg
gcgctcgaccggctggcggccaccccggaccgggcggccggcacccgcgtcctctacatc
tccccgctgaaggcgctggcggtcgatgtcgagcgcaacctccgcgcgccgctgaccggc
atcacccgggccgcgcaggaactcggcgagcccgaaccgaacatcaccgtcggcctgcgc
tccggggataccgcggcggcagcacgccgactcctcgccaaggcaccaccggacatcctg
atcaccacccccgagtcgctctacctgatgctcacctcgtcggtccgtgaaaccctgcgc
accgtcgacgcggtcatcgtcgacgaggtgcacgcggtggccggcaccaaacgcggcact
cacctggcgctgtcgctggaacgcctcgacgacctgctggagaccccggcgcagcgcatc
ggactctcggcgaccgtgcggcccccggaggtggtggccgacttcctcgccggctcccgt
ccgtgccgcgtcgtccgcccgcccgcagccaagacctttgacctgcgggtcgatgttccc
gtaccggacatggccaatatcccgccaccggccgaggacacggccgacgacctcgatgac
gcgttctcgccgaccgccggctcgctgtggccgcacgtcgaggcctccatcgtcgacgcg
atcgaggccaaccgcgcgaccatcgtcttcgccaattcccgtcgcctcgccgagcggctg
accgcccggctgaacgagatctacgcgcagcgctccggtgtgccggtgcaggcagcggcc
aatccgggggtccccgggggcgcacccgcgcacatcatggccagcggcgccgcgggtggc
gcgccgacgaccctcgcacgcgcccatcacggctcggtgagcaaggagcagcgcgccgag
atcgaggacgacctcaaatccggccgattgcgctgcgtagtcgccaccagctcactggaa
ctcggaatcgacatgggcgcagtggatctcgtgatccaggtggaggcaccgccgtcggtg
gccagtggattgcagcgcatcggccgcgccgggcatcaggtgggtgagatcagccagggt
gtgctctaccccaaacaccgcaccgatctggtgcactgcacggtcgcggtcgaacggatg
cgcgccggcgccatcgaggagctccgcatccccaagaatccgttggatgtgttggcgcag
cacacgattgccgccgcggccatggacgacctcgacgtcgaccagtggttcgacgtgatc
cgccgcgccgcgccgtaccgggagctggcccgcgaggtgtacgtatcgaccctggacctg
atctccgggcgatttccgtccgatgagttcgccgaactccgtccccgggtgacctgggat
cgcgacgccaacacactcgtcgggcgccgcggggcccagcgtctggccgtcacctccggt
ggaaccatcccggatcgcgggctgttcggcgtgttcatggtgggcgagaagtccgctcgg
gtcggtgagctcgacgaggagatggtctacgagtcccgcgtcggcgacgtcttcgcgctc
ggcgccacgagttggcgcatcgaggacatcacccacgaccgagtgctggtgacccccgcc
ttcgggcagccgggccggcttccgttctgggtgggcgacgccgtcgggcgtccggccgag
ttgggtgccgccatcggcaagttcaccggcgcgatcgccgatccgcaggaactggaccgg
caggcaaccgaactcggcctcaccgagtacgcccgcgacaacctcgccgcgctgatcgcc
gagcagcgcgaggccaccggtcatctccccaccgaccggaccctggtgatcgaacgcttc
cgcgacgagctcggcgactggcgggtgatcctgcactccccctacggtttacgcgtgcac
gccccgtgggcgagtgcgatctcggcgcgcctgcaggagactctcgggctggcgggcgcc
accaccgcatccgacgacggcatcatcgtgcgcctgcccgacaccgaagatgagccgccc
ggtgccgcggtgttcgtgatcgaccccgacgacatcgagcagatggtgaccgacgcgcta
gccgagtcgtcgatgttcgcgtcccgttttcgggaatgcgcggctcgcgccctgctgctg
ccgcgacgcgacccgggccgccgcgccccgctgtggcaacaacggcagcgcagtgcccaa
ctcctctccgtcgcatcacaattccccgacttcccgatcgtgctcgaagccgtccgcgaa
tgcctgcaggatgtctacgatctgcccgcgctgaccgacctgctgcgccggatctccacc
cgccgggtgcgtctggtcgagacggagacccccgaaccgtcgccgttcgcggcgtcgttg
ctgttcgggtatgtcggcgcgttcatgtactccgacgacgcgccactggccgaacgtcgg
gccgccgcactgtctctcgacaccagcctgctggcccagctgctcggtcgcgtcgatctg
cgcgagctcctcgatcccggggtaatcgctgcggtcatcgcgcggttgcagcgactcgat
ccatctcgccaggcccgcgacgccgaggacatcgtcgacctgctgcgctggctcggtccg
ctcaccaccgaggaggtggccgcccggtaccagggcgacgatgccgccgccgtgctggcc
gatctgcatcgcgccggtccgatcatctcggtcactcatcagggccgtcccctgtgggcc
gccgtcgaggacaccgcacgactacgtgacgcgctcggtgtcccggctccgctgggtgtc
ccggccgcctacaccgacccggtgcccgatcccgtgaccgatctggtgcaccggtacgcg
cgcactcacggtcccttcaccctgaccgaggccgccgagtcgctggggatggcggtggcc
gtcgtccgcgacacactggtgcgcctggccgcccagcgcaaggtggtcgaaggcgatttc
ctgcccgcggccgccgacgacgcacacccgaccacgcagtggtgccatgccgatgtcctg
ggacagatccggcgcggttcgctggcggccagtcgcgccgacgtcgcgcccgtcgacgcc
gccaccctgggccgtttcctcggcggctggcatcacgtcacacccgccgagcgactgagc
ggcgtcgacggggtcgccacggtgctcgaccagctcgccggctatccgctgccggcgtcg
gcgtgggagtcactgatcctgccggcccgcgtcgccgactactcccccgccatgctcgat
gaactgctctcctcgggcgaggtggtgtggtcgggtcacggccggatcggcggtgccgac
ggtcagatcgcgttccatcctgccgatctgctcccggtcactctcgaaccgcccgacgag
atcgacctgaccgccatccacgccgcgctgctggcggtgctcaccccgggtggcgcgttg
cgtttcgcccagctcaccgatgcggcctcggaaaccctgtcggcggccggcgcagcggtg
ccatcgacagccgacatcgagtcggccctgtgggatctggtgtgggccgggcaggtcgcc
aacgactccttcgccgcggtacgtgcgctgctgcggcccgatcgtcgatcggtgggacgc
ggcgccggttcccgtccgacgcctgcccaccgcggtcgcgcacgcgcccctcgcattcgg
ccgcaacgtctttcgacacgttttctcagcgagcacgcgaccggccggccgtcgtcaccg
acgacgaccggtcgctggttcctgctggcccgcgatgatctcgatccgaccgccgccacc
caggcgctgtgcgaacaacttctggtccgctacggagtggtgacgcggggttcggtggcc
accgagggtgtacccggtgggttcgcgcgggtctacaaggcgctcagcgtcttcgaggac
agcggcgtggtccgtcgtggctactacgtcgacgggctcgggggcgcccagttcgcccgg
ccgaccaccgtcgacgagttacgccgccatgccgtcgacgcggacagcgctgccccggct
gttgtgctggcggccaccgacccggccaatccctatggcgcagttctcgattggcccgag
acaagcgctgaggactccgggcaccgcccgggccgcaaagcgggtgccctcgtcgtgttg
ctcgccggcgagccggtgctgttcgtcgaacgtgggggtaagacggttctcaccttcagc
tcggacgccgatcggttacgcaccgccgcaggcgctctcgccgacgccgtgcgcgccggg
cggctgtcccggctgacgatcgatcaggtggattcgcggccggtgctcggctccgagatg
gcaccggtgctcgtcgacgcggggttcgccaccaccccgcgcggtgtgcgcctgcggtac
ggcctccatgcctga

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