Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_0059
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Entry
GbCGDNIH4_0059 CDS
T03156
Name
(GenBank) Transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Pathway
gbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GbCGDNIH4_0059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbs03021
]
GbCGDNIH4_0059
03019 Messenger RNA biogenesis [BR:
gbs03019
]
GbCGDNIH4_0059
Transcription machinery [BR:
gbs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GbCGDNIH4_0059
Messenger RNA biogenesis [BR:
gbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GbCGDNIH4_0059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
AAA_22
S1CSD-TOTE-2
Spore_III_AA
AAA
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
AHJ64420
LinkDB
All DBs
Position
64184..65527
Genome browser
AA seq
447 aa
AA seq
DB search
MDGRSGDIPPSDAVPLLYILRAPMHLAELKAKSPADLLSFAESLQIENASSLRKQDMMFA
ILKNLAENDQAIHGEGTLEILSDGFGFLRSPEANFLPGPDDIYVSPSQVRRFGLRNGDTV
GGQIRAPKDGERYFALLKLDTVNFEAPESVRHRINFDNLTPLYPDQRLKMEVENFQSVAK
GPGKDCTPRVIDLIAPIGKGQRALIVAPPRTGKTVMLQNIATAIAENHPEAFLMVLLIDE
RPEEVTDMARSVKGEVIASTFDEPATRHVQVSEMVLEKAKRLVEHKRDVVILLDSITRLA
RAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVI
FEEFKGTGNSELVLDRKLSDKRTFPAIDITKSGTRKEEMLVDKATLSKMWVLRRILNPMG
TTDAMDFLLDKLKYSKTNQDFFDAMNT
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
gtggacggtcgatctggtgacattcccccttctgatgctgttcctcttttatatatactt
cgggcgcccatgcacctcgccgaattaaaggctaaatcccccgcggacctgctcagcttt
gctgaaagcctgcagatcgaaaacgcatcatccctgcgtaaacaggacatgatgttcgcc
attctcaaaaatctggccgaaaatgatcaggcgatccatggcgaaggaacgctggaaatc
ctgtcggacggtttcggcttcctgcgcagcccggaagcgaatttcctgcccggtccggat
gatatctatgtttcccccagccaggtgcgccgctttggcctgcgcaatggcgatacggtc
ggtggacaaatccgcgcgcccaaggatggagagcgttatttcgccctgctgaagcttgat
acggtcaatttcgaggcgccggagtccgtgcgccaccgcatcaatttcgacaacctcacc
cctctttaccccgatcagcgcctgaagatggaggtggagaactttcagtccgtcgccaag
gggccgggcaaggattgcactccgcgggtgattgacctgatcgctccgatcggtaagggc
cagcgcgccctgatcgtggcgccgccgcgtaccggcaagacggtgatgttgcagaatatc
gcgaccgccatcgcggaaaatcatccggaagccttcctgatggtgctgctgatcgacgag
cggccggaagaagtgaccgatatggcccgcagtgtgaagggagaggtcatcgcctccacc
tttgatgagccggcaacccggcatgtgcaggtctccgagatggtgctggaaaaggccaag
cgtctggtggagcacaagcgggatgtcgtgattctgctggacagcattacccgtctggcg
cgtgcctacaacaccgtcgtgccgtcatcgggcaaagttctgaccggtggcgtggatgcc
aatgcattgcagcggccaaagcgctttttcggtgcggcgcgtaatattgaggaaggtggc
agtctcacgattattgcgacggctctgatcgataccggcagccgtatggacgaagttatc
ttcgaagagttcaaaggcaccggcaacagtgaattggtgctggatcgcaagctgtccgac
aagcgcaccttcccggcgatcgatatcaccaagagtggtacccgtaaggaagaaatgctg
gtggataaggccactttgtcgaagatgtgggtgctgcggcgtatcctcaacccgatgggc
accaccgatgcgatggatttcctgctcgacaagctgaaatacagcaagacgaatcaggat
ttcttcgatgcaatgaacacttga
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