Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_0159
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Entry
GbCGDNIH4_0159 CDS
T03156
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Pathway
gbs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GbCGDNIH4_0159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbs03400
]
GbCGDNIH4_0159
Enzymes [BR:
gbs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GbCGDNIH4_0159
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GbCGDNIH4_0159
DNA repair and recombination proteins [BR:
gbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GbCGDNIH4_0159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF6127
Motif
Other DBs
NCBI-ProteinID:
AHJ64530
LinkDB
All DBs
Position
182975..183856
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AA seq
293 aa
AA seq
DB search
MPELPEVETVMRGLRARLEGRRIVRAEVRRPDLRFPLPPGLAARLTGAYVRDFRRRGKYI
LMRLEGGDSLLIHLGMSGRFVLRAPADTTLPEGHEPERHEHVSMMAEDGWIAALVDPRRF
GMMDLVPTAAEDAHRLLSSMGPEPLEDAFCLSGLEKAFAGRRTAVKLALLDQRIVAGLGN
IYVSEALFRAGINPLRAAGDLSRAELRRLIPAIRETLTEAIAAGGSSLRDYVQPDGELGY
FQHAWKVYGRAGQPCEHCPGLSAGCQGIVQIVQGGRSTYFCPCTQQQAGKQAG
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgccggaagttgaaacggtgatgcgtggcctgcgtgcgcgtctggagggg
cgtcgtatcgtgcgggcggaggtcaggcggcctgatctgcgctttcctctgccacccggt
ctggcggcccggctgacgggtgcgtatgtgcgggatttccgtcggcgtggaaaatacatc
ctgatgcgtctggagggcggtgacagcctgttgattcacctgggcatgtccggtcgtttc
gtgctgcgtgcacccgccgacacgaccttgccggaggggcatgaaccggagcggcatgaa
cacgtctccatgatggctgaggatggctggatcgcggcgctggtcgacccgaggcggttc
ggcatgatggatctggtgccgactgcggcggaggatgcgcatcgtctgctctcctccatg
gggcctgagccgctggaagatgcattttgtctctctggtctggaaaaggcatttgccggt
cgccgcacggcggtgaaactggctctgctggatcaacggatcgtggccgggctgggcaat
atctatgtttcggaggccctgttccgggccgggatcaatccgctgcgggccgcgggggac
ctctcccgggctgaactccggcggttgatccccgcgattcgcgagacgttgacggaagcg
attgccgcaggtggctcctccctgcgtgactatgtgcagccggatggtgaactgggctat
ttccagcatgcatggaaagtctatggccgtgcggggcagccttgcgaacattgtcccggc
ctgtccgccggctgtcaggggatcgtccagatcgtgcagggcggtcgaagcacgtatttc
tgtccctgtacccagcaacaggcggggaaacaggcgggatga
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