Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_0534
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Entry
GbCGDNIH4_0534 CDS
T03156
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Pathway
gbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GbCGDNIH4_0534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbs03019
]
GbCGDNIH4_0534
03009 Ribosome biogenesis [BR:
gbs03009
]
GbCGDNIH4_0534
Enzymes [BR:
gbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GbCGDNIH4_0534
Messenger RNA biogenesis [BR:
gbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GbCGDNIH4_0534
Ribosome biogenesis [BR:
gbs03009
]
Prokaryotic type
rRNA helicases
GbCGDNIH4_0534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHJ64940
LinkDB
All DBs
Position
complement(617263..619473)
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AA seq
736 aa
AA seq
DB search
MGVRPVEEMPSIISPTGFYALMFSDTAATHADADMNTHAEASAPALFPALHPTLKAALDA
KGYTSLTPVQDAVLTADAAERDLLVSAQTGSGKTVAYGLALADTLLGADERLGQAGAPLA
LIVAPTRELAMQVQQELLWLYGPAGARVVSCIGGMDARREAQALERGCHIVVGTPGRLCD
HLGRGRLNLSRLRAVVLDEADEMLDLGFRDELEEILDATPAERRTLLFSATIAREIAALA
KRYQTNALRIDTVSRNKPHADIDYRVVRVLPHEARHSVVNVLRFYDAPIAMVFCGTREEV
RHFQASLMERGFSSVALSGELSQTERSRALHLLREGQARVCVATDVAARGLDLPALDLVI
HADLPTNSATLLHRSGRTGRAGRKGVSVLIAPVNRQRKADQLLHTAGIRAEWTPVPTVEE
ISIRDRERMLESPALSAPISDDEREAARILMEGRDAEALAVAVLRLHRGRLPEPEDVQVV
HERPSNSERGDRPQRERVRDRDRSDQDRPARTPRRDNDGEARSTRWFKLSVGRNDNADPK
WIVPLLCRAGHIRKPDIGAIRIMETETFFEIDSARADTFSSAIEGREADEVAISAASSPP
AGVSGGYTPRPSTAERGKGGFDRAMREADHGGDETGRPRRTSKTSPRSGERKAGERKAYD
KPYEAKSYDSKAGGKPRTARSGSSAYAGDAPRRGASKDKPSYGKSSSTAPSGRHTAPRGR
AAGPGGSSSRKKTSRT
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgcggcccgttgaagaaatgccctccatcatctccccgaccggattttatgca
ttgatgttttccgataccgccgcgacgcacgcggatgccgacatgaacacccatgccgag
gcatcagccccggccctgtttcccgcgctgcatccgactctgaaagcagcgctggatgcc
aagggctatacgagcctgacccctgtgcaggatgctgttctgaccgctgatgccgccgag
cgcgatctgctggtctccgcccagaccggttccggcaagaccgttgcctatggtctggct
ctggccgacacgctgctgggcgctgacgaacggctcggccaggccggtgcaccgctggcg
ctgatcgtggccccgacccgcgaactggccatgcaggtgcaacaggaattgctgtggctg
tatggtcccgccggcgcccgtgtcgtttcctgcatcggtggcatggatgccagacgggaa
gcgcaggcgctggagcgcggctgccatatcgtcgtcggcacgccgggccgtctttgcgac
catctgggacgcgggcgcctgaatctttcccgcctccgcgccgtggtgctggacgaagct
gacgaaatgctcgatctcggcttccgggatgagctggaggaaatcctcgacgccaccccc
gcagaacgccgtaccctgctgttctccgccaccatcgcccgtgaaatcgccgcgctggcc
aagcgttaccagaccaatgcgctgcgcatcgacaccgtttcccgcaacaagccgcatgcc
gatatcgactatcgcgtcgtgcgggtgctgccgcatgaggcgcgtcactcggtggtgaac
gtgctgcgtttctacgacgctcccatcgccatggtgttctgcggcacgcgtgaggaagtc
cgccattttcaggccagtctgatggagcgcggcttctcctctgtcgcgctgtccggcgag
ctgagccagaccgaacgcagccgcgccctgcatctgctgcgcgagggacaggcccgcgtc
tgtgtcgccacggatgtggcggcccgcggcctcgatctgcccgcgctggatctggtgatc
catgccgatctgccgaccaattccgccaccctgctgcatcgcagcggtcgcaccggccgc
gccggacgcaagggggtcagcgtgctgatcgcccccgtcaaccgtcagcgcaaggccgat
cagcttctgcacacggctggcattcgcgctgaatggaccccggttccaacggtcgaggaa
atctccatccgtgaccgggagcgcatgctggaaagcccggccctgagtgcccccatctct
gacgacgagcgtgaagcggcgcgtatcctgatggaaggccgcgatgcggaggctctggcg
gtcgccgtgctgcgcctgcatcgcggacgcctgccggaaccggaagacgttcaggtcgtg
catgagcgccccagcaacagcgagcgtggagaccgtccgcagcgtgagcgggtccgtgac
agagaccgcagcgatcaggaccgcccggcccgcacgccgcgccgggacaatgacggcgaa
gcacgttccacacgctggttcaagctgagtgtcggtcgcaacgacaatgccgatccgaaa
tggatcgtgccgctgctgtgccgcgccggtcacatccgcaagccggatatcggtgcgatt
cgcatcatggagacggagaccttcttcgagatagactctgcccgtgccgacacgttcagc
agcgccattgagggccgtgaggccgatgaagtggccatttccgccgcttcgtctccgccc
gcaggcgtttcaggtggctacacaccgcgcccctcaaccgcggaacgcggcaaaggcggc
ttcgaccgtgccatgcgcgaagccgatcacgggggtgacgagaccggccgtccacgccgc
acttcgaaaacctccccccgctccggcgaacgtaaagcgggcgaacgtaaagcctatgac
aagccctatgaggcgaagtcctacgattcgaaagccggcggtaaaccccggaccgcccgc
agcggctcatccgcctatgcaggtgacgccccccggcgtggcgcgtcgaaagacaagccg
tcctacggcaagtcctcttccaccgcaccatccggtcgccacaccgctccccgcgggcgg
gcggcaggaccgggtggcagcagcagccgcaagaagaccagccgtacctga
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