Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_0804
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Entry
GbCGDNIH4_0804 CDS
T03156
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbs03032
]
GbCGDNIH4_0804
03400 DNA repair and recombination proteins [BR:
gbs03400
]
GbCGDNIH4_0804
Enzymes [BR:
gbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GbCGDNIH4_0804
DNA replication proteins [BR:
gbs03032
]
Prokaryotic type
DNA Topoisomerases
GbCGDNIH4_0804
DNA repair and recombination proteins [BR:
gbs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GbCGDNIH4_0804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
DUF3161
TarS_linker
Motif
Other DBs
NCBI-ProteinID:
AHJ66810
LinkDB
All DBs
Position
complement(933652..936381)
Genome browser
AA seq
909 aa
AA seq
DB search
MPHDVAIIGILMTDVVVVESPAKAKTINKYLGGNYTVLASFGHVRDLPPKDGSVRPDQDF
AMDWEADERGRKQVAAIAKALKGAETLYLATDPDREGEAISWHVRAMLEEARALKGVEVR
RITFNEITRNAIRHAIEHPRDLDQPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGR
VQSVALRLICEREAEIEVFRPREYWTVETHFFTPAGAPFTARLTHLDGKKLDQFDLNTEA
LAMRARALVEQGQFHVGTIERKKVKRNPPPPFTTSTLQQESSRKLGFGAQATMRLAQQLY
EGVEIGGETVGLITYMRTDGVQMAREAMFSIRDHVKDSYGLDYLPAAPREYSSKAKNAQE
AHEAIRPTDVERTPDSVARYLNPEQRRLYELVWKRAVASQMQSAELDQVTVDIFPQTGDA
KSVQLRATGSIIAFDGFLKLYREGQDDTEEEEGRMLPPMAERDPLRQDRVDASQHFTQPP
PRYSEASLVKRMEELGIGRPSTYASILSVLQDRNYVRLDKRRFHPEDRGRLVTAFLTSFF
ERYVDTNFTASLETQLDEISDGRADWRQVMQAFWQDFYQAVEQTKDLKISDVIDALDRDL
GPHFFPTREDGTDPRICPACGDGRLGLRLGRHGSFIGCSNYPGCSYTRRLGIDGAEGEAE
TLKEGMRVLGQHPETGEDITVKRGPYGLYVQQGEAEEGSKKKPRRASLPRGVDGETILLD
QALGLLSLPRLVGIHPETGEPIEANLGRFGPYVKMGGIYGNLDKDDDVLTVGLNRAVDVL
AKKMASIRTLGTHPKDKEPVVVRKGRFGPYVQHGQVVANVPREIEMDDVTLDDALGWLAE
KGKPLKAKGGRKVAAKSSGKKAASADGNEAQPLKKATAKKTTRAAGAGKAAAKKSGTRSA
TAKTAKAER
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
gtgcctcatgacgttgccataattggaatactcatgacggacgttgttgtcgtcgaatcg
cctgccaaggccaaaacgatcaataagtatctgggtgggaactataccgtcctggccagt
ttcggtcacgtgcgcgatctcccaccaaaagatggcagcgtccgcccggatcaggacttc
gccatggactgggaggccgatgaacgcggccgcaaacaggtcgcggccattgccaaagcc
ctgaaaggagcggagacgctctatctggccaccgacccggatcgtgagggcgaggcaatt
tcatggcatgtccgcgccatgctggaggaagcccgggccctgaaaggcgtcgaggtccgc
cgcatcaccttcaacgaaatcacccgcaacgcgatccgccatgccattgagcatccgcgt
gatctggatcagccactgatcgaagcctatctggcgcgccgggcgctggattatctggtg
ggtttcaccctgtcgccggtgttgtggcggaaactgccgggcagtcgcagcgccgggcgg
gtgcaatcggtagcgctgcgcctgatttgcgagcgggaagccgagatcgaggttttccgt
ccgcgcgaatactggaccgtcgagacccatttcttcacccctgcaggcgcgcctttcacg
gcacggctgacccatctggacggcaaaaagctcgaccagttcgatctgaacaccgaagcg
ctggccatgcgcgcgcgtgcgctggtggaacagggccagttccatgtcggcacgatcgag
cgcaagaaggtcaagcggaatccgccgccgcccttcacgacctccaccctccagcaggaa
agcagccgcaagctgggcttcggcgcacaggccacgatgcggctggcgcaacagctttac
gaaggcgtggagatcggtggcgagacggtcggtctgatcacctacatgcgaaccgacggc
gtgcagatggcgcgggaggctatgttctcgatccgcgaccatgtgaaggattcttacggt
ctcgactacctgcccgccgccccgcgtgagtattccagcaaggcgaagaacgctcaggaa
gcgcatgaagccatccgccccaccgatgtcgagcgcacaccggacagcgtcgcccgctat
ctgaaccccgaacagcgccggctctacgagctggtgtggaagcgggcggtcgccagccag
atgcaatcggcagaactcgatcaggtgacggtcgatatcttcccccagaccggtgatgcg
aaatcagtgcagttgcgtgccaccggctccatcatcgcctttgacggcttcctgaaactg
tatcgggaggggcaggacgataccgaggaagaagaaggccgcatgctgccgcccatggca
gagcgtgatccgctgcgtcaggaccgggtcgatgccagccagcatttcacccagccaccg
ccgcgctacagcgaggcctcactggtcaagcgcatggaggagctggggattggccgtccc
tccacctatgcctcgatcctgtccgtgttgcaggaccggaattacgtccggctcgacaag
cggcgtttccatccggaggatcgcggacggctggtaacggcgttcctgaccagcttcttc
gaacgctatgtggacaccaacttcaccgcctcactggaaacgcagctcgacgagatttcc
gacggccgcgccgactggcgtcaggtcatgcaggcattctggcaggatttttatcaggcg
gtcgaacagaccaaagacctcaagatcagcgatgtgatcgacgcgctggatcgtgatctc
gggccgcatttcttcccgacgcgggaggacggcactgatccacgcatctgcccggcctgc
ggtgacgggcggctgggtttgcggctggggcggcatggcagctttatcggctgctccaac
tatcccggctgttcctatacacggcgtctgggcatcgatggggcggaaggcgaggccgag
accctcaaggaagggatgcgggtgctggggcaacacccggaaaccggagaggacatcacc
gtcaagcgcggcccatatggcctgtatgtgcaacagggcgaggccgaagaaggctccaaa
aagaaaccgcgccgtgcctccctgccgcgtggggtggatggagagaccatcctgctggat
caggcgcttggcctgctctccctgccccgtctggttggcatccacccggaaaccggggag
ccgatcgaggccaatctcggtcggttcggcccctatgtgaaaatgggcgggatctacggc
aatctggacaaggatgatgacgtgctgacggtggggctgaaccgcgctgtcgatgtgctg
gccaaaaagatggccagtatccgcacgctcggcacccatccgaaagacaaggagccggtg
gtggtgcgcaagggccgtttcggcccctatgtccagcatgggcaggtggtcgccaatgta
ccgcgtgaaatcgagatggacgatgtcacgcttgatgatgcgctaggctggcttgctgaa
aaaggcaaacctctcaaggcgaaaggcggtcgcaaggtcgcagccaaatcatccggcaaa
aaagccgcttctgctgatggcaatgaggcccagccattgaaaaaagccacggcgaaaaaa
acgaccagagcagcaggcgcaggcaaggcagcggccaaaaaatcagggacccgcagcgct
acggccaaaacggcgaaagcggagcgctag
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