Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_0836
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Entry
GbCGDNIH4_0836 CDS
T03156
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Pathway
gbs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GbCGDNIH4_0836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbs03400
]
GbCGDNIH4_0836
Enzymes [BR:
gbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GbCGDNIH4_0836
DNA repair and recombination proteins [BR:
gbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GbCGDNIH4_0836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
SecA_DEAD
DUF6866_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHJ66778
LinkDB
All DBs
Position
968197..971664
Genome browser
AA seq
1155 aa
AA seq
DB search
MLTVYGAPEGWDAVLINRRRQETGGVIVHVARDDARVARLAEALRFFAPKVEVLTFPAWD
CLPYDRVSPNPELVSERVATLARLAETPDSPRVVLTTFNALVQRVPPRGQFHGTGLDLGV
GDLADPDEMARFLDQHGYVRAGTVMEAGEYALRGGIVDIFPSGEAEPIRLDLFGDQIESI
RRFDPTTQRSGEAVERLVLRPVSEIPLDKDSITRFRTAWREVFGQDAAQDPIYLSISDGR
RHAGMEHWAPLFHESMETLLDYVPGAVVSLDHQGEDVLQSRLEMIEDHFHARHAPVREGE
TPYRALSPERLYLTRAEWDAAINPRQPVIFSVFDRPDGAQGVDGGGRSGALFAKTAATEG
GNSFQQLRDASQQWAKDGRRLIVAAWSRGSRERLMHLLRENGIKAETAGTFEGARNLPFD
TAAMVVLGLERGFLAEKIGVVSEQDLLGERIARPPRKRKRADQFIAEATEIAEGDLVVHQ
DHGIGRYDGLVTLTVSGAPHDCLRLLYDGNDKLFLPVENIEMLSRFGAETAGVALDKLGG
VSWQSRKAKMKQRIRDMAGELIRIAAERKVREAPMLTPQEGAWDEFCARFPFAETEDQAR
AIADVLEDMASGRPMDRLICGDVGFGKTEIALRAAFVAAMTGAQVAVVVPTTLLARQHYR
TFAKRFEGLPVTVAQLSRMVTAKEASRVRAGLADGSVNIVVGTHALLAKTVQFADLGLVI
VDEEQHFGVSHKEKLKALRADVHVLTLTATPIPRTLQLSLSGVREMSIIATPPVDRLAVR
TFIMPFDSVVVREAIQRERFRGGQVFCVCPRLEDLGRMAERLAEIVPEAKLITAHGQLAP
TELERVMTEFGDGKHDILLATNIVESGLDMPAVNTIIIHRADMFGLGQLYQLRGRVGRGK
QRGYAYLTWPQAHRLSVAAEKRLEVMQTLDTLGAGFTLASHDLDIRGAGNLLGDEQSGHI
REVGIELYQQMLEDAVADMRHASHRESARDWTPNIGLGLPVLIPETYVRDLPVRLGLYRR
IGALASDAETEAMAAELVDRFGPMPEEVENLLQVVSLKRQCRLAGVEKLEAGPKGMVVQF
RGNHFANPAGLIAWLASVQGAGGVQGQGGVQGQGLKLRPDHKLALVYDMTVAERVQVAKT
LLGNLVRLTQQAQAA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgctgacagtttacggtgctcccgagggttgggatgcggttctgatcaatcgccgccgt
caggagacggggggggtgatcgtgcatgtggcgcgggatgatgcccgtgtggcgcgtctg
gccgaggcgctgcggttttttgcgccaaaggtcgaggtgctgactttccccgcctgggat
tgtctgccgtacgaccgtgtttcccctaatccggagctggtcagtgaacgtgttgccacg
cttgcgcggttggcggagacgcctgattctccgcgagtcgtgctgacgacgttcaatgcg
ctggtgcagcgtgtgccgccacggggccagtttcatggcacggggcttgatcttggggta
ggcgatctggccgacccggatgagatggcgcggtttttggatcagcacggctatgtgcgc
gccggcacggtcatggaggccggggaatacgcgctgcggggtggaatcgtcgatattttc
ccctccggtgaggctgagccgatcaggctcgacctgttcggcgatcagattgaaagcatc
cgccgcttcgaccctactacccagcgcagcggtgaggcggtggagcggctggtgttgcgc
ccggtcagcgaaattcccctcgacaaggacagtatcacccgttttcgcactgcctggcgg
gaggtattcggtcaggacgcggcgcaggatccgatctatctgagtatttccgatgggcgg
cgtcatgccggtatggagcattgggcacccctgtttcacgaaagcatggaaacccttctg
gactatgtgcccggcgcggtggtgagtctggaccatcagggcgaggatgttctgcaatcc
cgtcttgagatgatcgaggatcattttcatgcacgccatgctccggtgcgggagggcgaa
acaccctatcgggccttgtcaccggagcggctctatctgacccgtgccgaatgggatgcg
gcgatcaatccgcggcagccggtgattttttccgtgttcgaccggccggatggagcacag
ggcgtggatggcggtggccgctccggtgcgctcttcgcgaaaacagccgcgactgaaggc
ggcaattcctttcagcaattgcgggatgcatcccagcaatgggcgaaagatggccggaga
ctgatcgtggccgcatggtcgcgcggctcccgcgagcggctgatgcatctgctgcgtgag
aacgggataaaggcagagaccgccggaacgttcgagggcgcgcgcaacttgcccttcgat
acggcggcgatggtggtgctggggctggaacgcggatttctggccgaaaaaatcggtgtg
gtcagcgaacaggatctgttgggcgagcgtatcgcccgtccgccgcgcaagcgcaaaagg
gccgaccagtttatcgccgaggccaccgaaatcgccgagggcgatctggtggtgcatcag
gatcacggtattggccgctatgacgggctggtgacgctgacggtcagtggtgcgccgcat
gactgtctgcgtctgctgtatgacggcaatgacaagctgttcctgccggtcgagaatatc
gagatgctgtcccgcttcggtgcggaaacggcgggtgtggcgctggacaagctcggcggc
gtcagctggcagagccgcaaggcgaagatgaagcagcgtatccgcgatatggccggagag
ctgatccggatcgccgcggagcgcaaggtgcgtgaagcaccgatgctgaccccgcaggaa
ggcgcgtgggacgaattctgcgcccgttttcccttcgcggagacggaggatcaggcgcgg
gccatcgccgatgtactggaggatatggcttccggtcgcccgatggatcgcctgatctgc
ggcgatgtcgggttcggcaagaccgaaatcgccttgcgggcggctttcgtggcggcgatg
acgggcgcacaggtggcggtggtggtgccgaccaccctgttggcgcggcagcattaccgg
actttcgccaaacggttcgaaggactgccggtgacggttgcccagctctcccgcatggtc
acggccaaggaagccagccgggtgcgggcgggactggcggatggctcggtgaatatcgtg
gtcggcacgcatgcgctgctggccaagacggtgcagtttgccgatctcggcctggtgatc
gtggatgaggagcagcatttcggtgtctcccacaaggagaagctgaaagcattgcgggcc
gatgtgcatgtgctgacgctgacggcaacgccgatcccgcgcacgcttcagctcagcctg
tccggggtgcgggagatgagcatcattgcgacaccgcccgtggatcggctggcggtgcgc
actttcatcatgccattcgacagcgtggtggtccgggaggcgattcagcgcgagcgtttc
cggggtggtcaggttttctgtgtctgcccgcgtctggaagatctgggccgtatggcggaa
cgtctggcggaaatcgtgccggaggcgaagctgatcaccgcgcatgggcagctggcaccc
accgagcttgagcgggtgatgaccgaattcggtgacggcaagcatgatattctgctggcg
acgaatatcgtcgaaagcggtctggatatgccggcggtgaacacgatcatcatccatcgt
gccgatatgttcggtctggggcagctttatcagctgcgtggacgggtcggccgcggcaag
cagcgtggctatgcctacctgacctggccacaggcgcatcgtttgtcggtggcagcggaa
aagcggctggaagtcatgcagacgctggatacgctgggggcaggctttacgcttgccagc
cacgatctggatattcgcggtgcgggtaatctgctgggtgacgaacagtccggccatatc
cgcgaggtggggatcgagctttatcagcagatgctggaagatgcggtggccgatatgcgc
catgccagccatcgggagtcggcgcgggactggacgccgaatatcggtctgggtctgcct
gtgctgatcccggaaacctatgtgcgcgatctgccggtgcgtcttggcctgtatcgtcgc
atcggtgcgctggcatcggatgcggagaccgaagccatggcggcggaactggtggaccgg
ttcggccccatgccggaggaggtcgaaaacctgcttcaggtggtgtcgctcaaacggcag
tgccgtctggccggggtggagaagctggaggccggcccaaaaggcatggtggtacagttc
cggggcaatcattttgccaacccggccggtctgatcgcctggctcgccagtgttcaggga
gctgggggcgttcagggacaggggggtgttcagggacagggcctcaaattgcggcctgat
cacaagctggcgctggtctacgacatgactgtggctgagcgtgtgcaggttgcgaaaacc
ctgctgggcaatcttgttcgcttgacgcaacaggcgcaggcggcatga
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