Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_0879
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Entry
GbCGDNIH4_0879 CDS
T03156
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Pathway
gbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GbCGDNIH4_0879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbs03019
]
GbCGDNIH4_0879
03400 DNA repair and recombination proteins [BR:
gbs03400
]
GbCGDNIH4_0879
Enzymes [BR:
gbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GbCGDNIH4_0879
Messenger RNA biogenesis [BR:
gbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GbCGDNIH4_0879
DNA repair and recombination proteins [BR:
gbs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GbCGDNIH4_0879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AHJ66733
LinkDB
All DBs
Position
1015529..1017412
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AA seq
627 aa
AA seq
DB search
MLDRLLHPFSGRSQENPALDVLRRVFGYPAFRGLQEDAIAHVIEGGDALVLMPTGGGKSL
CYQVPALCRDGMAIVVSPLIALMDDQVAALRQLGINAAALHSELEADQGRAVFRAAMDAR
LDLLYVSPERLLNGLMDRLPESRIALIAIDEAHCVSQWGHEFRPEYRALARLPERFPGVP
RIALTATADARTRDDILRALGMEHARVYAASFHRPNLRIAAAEKIAETSQMMAFLARHRD
QAGIIYCGSRAKTERTAQRLREKGIDAITYHAGLPPSEKQVALTRFRGGESVVMVATIAF
GMGIDRPDVRFVVHLDMPDSPESYYQQIGRAGRDGEESETLLLYGGEDIARARHFLSISV
APDSQKRVMRQRLDAMIGLAEAADCRTRALLSCFGESMEQPCGHCDLCAAPPETFDGSVE
AQKVLSAVYRTSQPRPGDTRPGMVFGALHIVALLRGELTEGIQRHQHDRLPTYGVGKDRP
ATFWRSVIRQLIARGMLDMDVEGHGGLRLVPDRVRTVLRGTEKVFLRQETASRLPARRTR
EERRASNPVSDNIPDAIRAEFDALRAWRMKEAKEQGVPPYVIFHDSVLRDIAISAPTDLE
TLGRIKGVGASKLDRYGRHVLAVLAGV
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgacaggctgctccaccctttttcgggtcgctcacaggaaaacccggcgctggat
gttctgcgccgggttttcggctatccggcttttcgaggattacaggaagacgccatcgct
catgtgattgagggtggcgatgcgttggttctgatgccgaccgggggcggcaagagcttg
tgttaccaggttccggcgctctgccgggatgggatggcgattgtggtgtccccgctgatt
gcactgatggacgatcaggtggcggcgctgcgtcaactgggtatcaatgccgccgccctc
cattcggagctggaagccgatcagggccgggccgtgttcagggcggcgatggatgccaga
ctcgatctgctttacgtctcgccggagcgattgctgaacggtctgatggatcggttgccg
gaatcgcgtatcgccctgattgcgattgatgaggcccattgcgtgtcgcaatggggccat
gagttccgccccgaatatcgcgctctggctcgcctgccggagcgattccccggtgttccg
cgcattgccctgacggccacagccgatgctcgcacgcgcgatgatattctccgtgcgctc
ggaatggagcatgcccgggtttatgcggcttcatttcatcgccctaatctgcgcatcgcg
gcagccgagaaaattgctgaaacatcgcagatgatggcgtttctggcccggcatcgtgat
caggcgggaatcatctattgcggcagccgtgccaagaccgagcgtacggcgcagcgtttg
cgtgaaaaagggatcgatgcgatcacctatcacgccggtttgccaccatcggaaaagcag
gtggccctgacccgtttccgcggcggggaatcggtggtgatggtggcgaccattgcgttc
ggaatgggtattgatcgtcctgatgtgcggtttgtggtgcatctggatatgccggacagt
ccggaaagctactatcagcagatcggtcgtgccgggcgcgatggcgaggagagtgagaca
cttctgctgtatgggggcgaggatattgcccgtgcccggcatttcctgtccatttcggtg
gcgcctgacagtcaaaagcgggtgatgcggcaacgtctggatgcgatgatcggtctggcg
gaagctgccgattgcagaacgcgggcgctgctctcctgttttggcgagagtatggagcag
ccatgtggtcattgcgatttatgtgcggcaccgccagaaacttttgatggttcggtggaa
gcgcagaaagttttgtctgcggtttatcgcaccagccagccaagacccggagatacgcgg
cccggcatggtattcggcgccttgcatattgtggccttgttgcggggggagttgacggag
ggaatccagcgtcatcagcatgaccgtttgccgacttacggtgttggcaaggatcgtccc
gccaccttctggcgtagtgtgatccggcagctgattgccagaggcatgctggatatggat
gtggaaggccatggtggattacggctggtgcctgatcgcgtccgaacggtcctgcgtggt
acggagaaagtctttctgcgacaggagaccgcttcccgcctgccagcacgtcgtacgcgt
gaggaaagaagggcaagcaatccggtttctgacaatattccggatgcgatccgtgctgaa
ttcgatgcgctgagggcatggcgcatgaaggaggcaaaggagcagggtgttcccccttac
gtgattttccacgacagcgtgctgcgagacatcgccatttctgcccccaccgatcttgaa
acgcttggtcgtatcaagggagtgggggcatcgaagcttgaccgctacggacggcatgtt
cttgctgtcctggccggggtttga
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