Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_1280
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Entry
GbCGDNIH4_1280 CDS
T03156
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Pathway
gbs03030
DNA replication
gbs03430
Mismatch repair
gbs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GbCGDNIH4_1280
03430 Mismatch repair
GbCGDNIH4_1280
03440 Homologous recombination
GbCGDNIH4_1280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbs03032
]
GbCGDNIH4_1280
03400 DNA repair and recombination proteins [BR:
gbs03400
]
GbCGDNIH4_1280
Enzymes [BR:
gbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GbCGDNIH4_1280
DNA replication proteins [BR:
gbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GbCGDNIH4_1280
DNA repair and recombination proteins [BR:
gbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GbCGDNIH4_1280
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AHJ66281
LinkDB
All DBs
Position
complement(1437346..1440777)
Genome browser
AA seq
1143 aa
AA seq
DB search
MAHANFVHLRVHSAYSLSEGAIKTDKIPALARQMAMPAVAMTDSGNLFGILEFSQACAGK
GVQPIIGCQIGLARPEQQQRLPPDQLVLLARDEAGLANIQRLSSLGFLQGEPGAKPQLPL
ETILAHAEGVMLLTGGTSGPLARLLAEGQKGEAERLLAVMKEAFPDRTVIELHRHGLRLE
KAIEPGLIALADAAGLPLVATNDCYFAQPDMYEAHDALLCIAEGRVLSETDRRRVTPDHW
FKPPEMMRALFSDLPEACDNTIAIARSCVVMAETRKPLLPVCPKVHEGQTEDETVRAMAV
EGLERRMEDVGAGPEDRARYRERLDYELDVIARMGFPGYFLIVADFIQWAKANDIPVGPG
RGSGAGSVVAWALTITDLDPLRFNLLFERFLNPDRISMPDFDIDFCQDRRDEVISYVRGE
YGGDRVAQIITFGKLQAKAAVRDVGRVLGMPFGQVNKVAELIPNNPAKPPTLQEAIDGEP
RLQQMRESDEAVKRLLEIALQIEGLYRHASTHAAGVVIGDRPLVELVPLYRDPKSDFLVT
QFSMKHVENAGLVKFDFLGLTTLTILQRAVKFLAGLGVSVDLAHVPLDDERTYQMLQRGD
AGGVFQFESQGMRDVLRQMRPDRFEDLIAAVALYRPGPMANIPAYCQRKHGEAWEPPHED
IRDILGETYGIMVYQEQVMQIAQKLAGYSLGAADSLRRAMGKKIRAEMETHRSIFAEGAS
KRGIPDAKSGEIFDLMVKFADYGFNKSHAAAYALVAYQTAYMKANYPEPFLAACMSLAIN
NTDKLAALRQEATRLGISVLPPDINRSAADFRVEQREDGMLAIRYALAAIKRVGLSAMEA
VVAARGEQAFTDLADFAARVDPRQLNRMQIENLARAGAFDSLVPNRAAVHGAADMILRRA
QAASEEKNSGQIGLFAGAGTPEPLRLPSCPDWPDMERLSFEAEAIGFHLTAHPLDVYTVT
LQKLRVLPSNRIEEHAARHGDQRVRLAGCVVNAKERTTRTGSRMAWVRLSDAGGSYEITV
FSEVLSRSRDALRIGACVLVTADIKAEGEDSIRITAQDIMPLDDAAGGTAGMMRVWLKDN
ADIGQIRAVLSRPDTKGKGHVVLIPRLNEDQEMEIELPGGFNVTPRLGQALKLIPGVERV
EEV
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacgcgaatttcgtccatctgcgggttcattccgcttattctttgagcgaaggt
gcgatcaagaccgataaaatcccggctttggcgcggcaaatggccatgcctgctgtcgcg
atgacggatagcggcaatctgttcggcattctggagttcagtcaggcctgtgccggaaag
ggagtgcagccgatcattggctgtcagatcggtctggcccggcctgagcaacaacaacgt
ctgccgcctgatcaactggttttgctggcgcgggatgaggcgggtctggcgaatatccag
cgtttatcatcgctaggctttctgcagggagaaccgggggcaaagccgcaactgccgttg
gagacgattctggcgcatgcggagggggtgatgctgctgactgggggcacctcaggaccg
ctggcccgtctattggcggaggggcagaagggggaggccgaacggttactggccgtaatg
aaggaggcttttcctgatcgcacggtgatcgagctgcatcggcatggtctgagactcgag
aaagcgatcgagccgggcctgattgctctggcggatgcggctggcttgcctttggtggcc
accaatgactgctatttcgctcagccggacatgtatgaggcgcatgatgcgctgctctgt
atcgccgaaggacgggtgctgtcggagacggatcgccgccgtgtcacaccggaccattgg
ttcaaaccaccggaaatgatgcgcgccttgttttccgatctgccggaggcttgcgacaac
acaatcgccattgcccgtagctgtgtggttatggcggagactcgtaaaccactgctgccg
gtctgcccgaaagtgcatgaagggcagacggaggatgagaccgtccgcgctatggccgta
gaaggccttgagcggcgaatggaagatgtcggggcagggccggaggatcgtgcccgctat
cgcgaaaggctggattacgagctggatgtcatcgcccgcatggggttccccggctatttc
ctgatcgtcgccgacttcatccagtgggccaaggcgaacgatattccggtggggccgggg
cgcggatcaggtgccggttcagtggtggcatgggcgctgacgatcaccgatctggacccg
ctgcggttcaatctcctgttcgagaggttcctgaatccggatcgtatctccatgccggat
ttcgatatcgatttctgtcaggaccggcgtgacgaagtcatcagctatgtacgtggtgag
tatggtggtgaccgcgtggcgcagatcatcaccttcggtaagcttcaggcgaaggcagcc
gtgcgcgatgtcggtcgtgtgctggggatgcccttcggtcaggtcaacaaggtcgcggag
ctgatcccgaacaatcccgccaagccgccgaccttgcaggaagccatcgacggagagcct
cgtctgcaacagatgcgggagagcgacgaagcggtcaaacgcctgcttgaaatcgctttg
cagatcgaggggctgtaccgccatgccagtacccatgctgccggtgtagtgatcggagac
cggccgctggtggagctggtgccgctttaccgcgatccgaaatccgattttctcgtcacg
cagttctcgatgaagcatgtcgagaatgccgggctggtgaaattcgacttcctcggcctg
acgactctgaccatcctgcaacgggccgtgaaatttctggccggtctgggggtgagtgtc
gatctggcgcatgtgccactggatgacgaacgtacctatcagatgctccagcgtggcgat
gcgggtggtgtattccagtttgaaagtcagggcatgcgggatgtgctgcggcagatgcgc
ccagaccgtttcgaggatctgattgccgcggtcgcgctgtatcgccctggcccgatggcg
aatatccccgcctactgccagcgcaaacatggagaggcctgggagccgccgcacgaagat
attcgcgatattctcggcgagacctacggcatcatggtctatcaggaacaggtgatgcag
atcgcccagaaactggcgggctactcgctgggggcggcagacagcctgcgccgtgccatg
ggcaagaaaatccgtgcagagatggaaacccaccgttccatctttgccgagggagcctcc
aaacgtggtatcccggatgccaaatcaggcgagattttcgacctgatggtcaagttcgcc
gattacggcttcaataaatctcacgctgccgcctacgcgctggttgcctaccagacggcc
tatatgaaggccaattacccggagccgtttctggccgcctgcatgagtctggcgatcaat
aatacggacaagcttgcagccttgcggcaggaagccaccaggctgggtatttcggtgttg
cccccggatatcaaccgctcggcagcagatttcagggtcgagcagagggaggatggcatg
ctcgccatccgctatgcgctggccgcgatcaagagggtcggtctgtcagcaatggaggca
gtggtcgccgcgcggggagaacaagccttcaccgatctggcggatttcgcagccagggtt
gacccacgccagctcaatcgcatgcagatcgaaaatctggcgcgggcaggtgccttcgac
tccttggtacccaaccgggctgcagtgcatggcgcggcggacatgatcctgcgccgggcg
caggctgcgtcggaggaaaaaaactccggccagatcgggctgtttgcgggggccggtacg
ccggagccattgcgtctgccatcctgccccgactggccggatatggagcggctgagcttc
gaggccgaggccatcggttttcatctcaccgcccatccgctggacgtctatacggtgacg
ttgcagaagctgagggtgcttccgagcaaccggatcgaggaacatgccgcgcgccatggc
gatcagcgtgttcgtctggccggctgcgtggtgaatgcgaaagagcgtaccacccgcacc
ggcagccgcatggcctgggtgcgtctgtccgatgctggcggcagctatgaaattacggtg
ttcagtgaggttctttcccgttcccgcgacgcgctgcggatcggtgcctgtgtgctggtg
actgctgatatcaaggccgaaggggaggattcgatccgcattacggctcaggacattatg
cctctcgatgatgcggcggggggcacagccgggatgatgcgcgtctggctgaaagacaat
gccgatatcgggcagatccgtgcggtgctgtcccgtccggacacgaaggggaaggggcat
gtcgtcctgattccacgtctcaatgaggatcaggagatggaaatcgagcttccgggtggt
ttcaatgtcacccctcgtctggggcaggccctgaaactcatcccgggcgtagagcgggta
gaggaggtctga
DBGET
integrated database retrieval system
