Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_1400
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Entry
GbCGDNIH4_1400 CDS
T03156
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Pathway
gbs03410
Base excision repair
gbs03430
Mismatch repair
gbs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GbCGDNIH4_1400
03430 Mismatch repair
GbCGDNIH4_1400
03440 Homologous recombination
GbCGDNIH4_1400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbs03400
]
GbCGDNIH4_1400
DNA repair and recombination proteins [BR:
gbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GbCGDNIH4_1400
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GbCGDNIH4_1400
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GbCGDNIH4_1400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AHJ66139
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All DBs
Position
1584991..1586886
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AA seq
631 aa
AA seq
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MSRPITTSIPRRGNTLTVVSSSVLRAEASTTVTDAVLGVERSLTGRAWYWRMPAGADIAA
IERLGLAISQRHGVSDLLGRLIATRGIGIDQADTFLQPTLRALMPDPSVLAGMDQAAARI
AAAITARETIAIFGDYDVDGACGTTLMLTVLRACGCPVLYHIPDRLREGYGPNAPALLSL
AERGASLIICVDCGTAAQTALSAVSGRADILVLDHHKSDTLPPAALATVNPNGPDDRSGL
TMLCATGVALLTCVATFRQLRRNGWQGHEGPPPDLLEMLDLVALATVCDVMPLTGINRAF
VTQGLKVMDRRNRIGIAALLEVAQMTGRVTASTCGFVLGPRINAAGRIDSADMGVRLLTA
TDPIAARDIAQALDSVNGRRQTVESSILDAAVRDAEARIEAGDAAIVIGGEDWHPGVVGI
IAGRLRERFNRPACVAGSADGLLKGSGRSVPGIDLGAAIIAAHQHGLLRSGGGHAMAAGF
ALPPESLPAFRTFMNERLAAAALLPKAADLALDASLGAGAVTVAMAEELAQLAPFGNGND
EPLLVLPRLRCRRAERIGRDGGTIRAFLESESGHTIKALLFRAKPEDMAAPIADILLNRE
LRPLHLAGYLRAETWNGTTSANFCISDAALA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggcctatcacaacttcaataccaagacgtggtaatactctgaccgtggtctca
tcctccgttctgcgcgcggaagcctccaccactgttacggacgctgttcttggggtggag
cggagcctgaccggtcgtgcgtggtactggcgcatgcccgcaggggccgatattgcagcc
atagagcggcttgggctggccatttcgcagcggcacggggtgagcgatctgctgggtcgt
ctgatcgcgacacgcggcatcgggatcgatcaggccgatacattcctgcaaccgaccctg
cgcgccctgatgcctgatccttccgttctggccggcatggatcaggctgctgcccgcatt
gccgccgccatcacggcaagggagaccatcgccattttcggcgattacgatgtggatggc
gcctgcggcacaacgctgatgctgaccgtgttgcgcgcctgcggctgtccggtgctgtat
cacatccctgaccggctgagggagggatatggcccgaacgcccctgccctgctgtctctg
gccgagcgtggggccagtctgattatctgcgtcgattgcggcaccgcggcccagacggcg
ctgtcagccgtgtctggccgagccgatattctggtgctggatcaccacaaaagcgacacg
ctgccccctgcggctctggccaccgtcaatccgaacgggcctgatgatcgctccggcctg
accatgctgtgtgccaccggcgtggcgttgctgacctgtgtagccacttttcgccagctt
cggcgtaatggctggcaggggcatgaagggccccctcccgatctgctggaaatgctggat
ctggtggcgttggcgaccgtgtgtgacgtcatgccgctgaccgggatcaaccgcgccttc
gtcacgcagggcctgaaggttatggatcgccgcaaccgtatcgggattgccgccctgctg
gaggtggcgcagatgaccgggcgggtgactgccagcacctgcggcttcgtgctgggacca
cgcatcaacgcagccgggcggatcgacagcgcggatatgggggtgcggctgctgaccgca
acagacccgatcgccgccagagacattgcccaggcgctcgattccgtgaacgggcggcgt
cagaccgtggaatcctccatccttgatgcagcggtcagggacgcagaagcacggatcgaa
gcaggagatgccgccatcgtcattggtggcgaggattggcatccgggcgttgtcggcatc
attgccggaagattgcgggagcggttcaatcgtccagcctgtgttgcgggttcggcagac
ggactgctcaagggatcaggacgctccgttcccggcattgatctgggcgctgccatcatc
gctgcccatcagcacggcctgctgcgcagcggtggcggccatgccatggcggccgggttt
gcactcccccctgaaagcctgcccgctttccgcaccttcatgaatgagcgtctggccgca
gcagccttgctgcccaaagccgccgatctggcgcttgatgccagcctgggtgccggggct
gtcactgtggccatggccgaggaactcgcccaactggcaccgttcggaaacgggaatgat
gaaccgctgctcgtgctgccccgactgcgctgccgcagggctgagcggatcgggcgggac
ggcggcacgattcgtgcctttctggagagcgaatccggtcacaccatcaaggcgctgctg
ttccgtgccaagccggaggatatggctgcaccaattgccgatatcctgttgaatcgtgaa
ttacgcccacttcatctggccggttatctgcgtgccgaaacctggaacggcacgacaagt
gcaaacttttgcatttctgatgccgcgctggcttga
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