Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_1965
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Entry
GbCGDNIH4_1965 CDS
T03156
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Pathway
gbs03030
DNA replication
gbs03410
Base excision repair
gbs03420
Nucleotide excision repair
gbs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GbCGDNIH4_1965
03410 Base excision repair
GbCGDNIH4_1965
03420 Nucleotide excision repair
GbCGDNIH4_1965
03440 Homologous recombination
GbCGDNIH4_1965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbs03032
]
GbCGDNIH4_1965
03400 DNA repair and recombination proteins [BR:
gbs03400
]
GbCGDNIH4_1965
Enzymes [BR:
gbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GbCGDNIH4_1965
DNA replication proteins [BR:
gbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GbCGDNIH4_1965
DNA repair and recombination proteins [BR:
gbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GbCGDNIH4_1965
NER (nucleotide excision repair)
GGR (global genome repair) factors
GbCGDNIH4_1965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
Beta-prop_NOL10_N
DprA_N
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
AHJ65568
LinkDB
All DBs
Position
2225592..2228393
Genome browser
AA seq
933 aa
AA seq
DB search
MSTSPTPDAALPDSTHLILIDGSGFIFRAFHALPPMTRPDGTPVNAVFGFTNMLARFLKD
HVGTHLAVIFDAGRTTFRNRLYPAYKAHRPEPPPELIPQFVLIREATAAFGVPAIELADW
EADDLIASYARAAVTRGGRVTIVSSDKDLMQLIQPGVEMQDPIKQKTIGPAEVMEKFGVT
PEKMIDVQALMGDSVDNVPGVPGIGPKTAAQLINDYGDLDGVLAALETMKPSKRRDNLVA
HAEDARISRQLVALSQDAPLPVPITDLSVRQPDAAVLQDWLNAQGFRSTAARLGLETGGS
PSPTSPAASRTATTAPAAASPLPPSSAPFGPYETVTTVEALEPWLAEARKAGLFAMDTET
DGLDAQQCRLVGISLAIAPGKACYIPLDHQTTLDQPVRQPAIAEIAATLNPILADAAVLK
IFQNGKFDLAVLRRHQMPVIAPIDDTMLISYAQEAGAHGHGMDELSVLHLGHSPISYDQV
TGTGRNRLPFPQVPIDKATAYAAEDADVTLRLWHALRPRLREAQSLTIYEQMERPLVPVL
CAMEAAGIRVDEAELRRMSADFALRMADMETEIHQLAGRPFNLASPKQLGEVLFDEIGLT
GGKRSKTGAWGTDAATLQAIADESGHALPARILDWRQLAKLKSTYADALVEDVNPRTGRV
HTSFQMAITTTGRLSSNEPNLQNIPIRTEEGSRIRRAFIADPGHVLISADYSQIELRLLA
HVADIPQLKDSFANGEDIHARTASEVFGVPMQGMDSLTRRRAKAINFGIIYGISAFGLAR
SLAISPGEARQYIDAYFARYPGIRDYMERTKEEARINGFVVTPFGRRCWVPGIADRNPAR
RGYAERQAINAPLQGGAADIIKRAMVRLPAMLTDNGFQTRMLLQVHDELLFEAPEAEAEA
VARLVTTTMQDAARISVPLVVETGIGTNWGEAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacctccccgacgccggacgcagcgcttccggacagcacccatctgattctgatc
gacggatcgggattcattttccgcgccttccacgccttgccgccgatgaccagaccggat
ggaacaccggtcaatgccgtcttcggctttaccaacatgctggcgcggtttctgaaagat
cacgtcggcacgcatctggcggtgattttcgatgccgggcggaccactttccgcaatcgg
ctctatccggcctacaaggcgcatcgtccggagccaccgccggagctgatcccgcaattc
gtgctgatccgggaggccacggccgccttcggcgtccctgcgatcgaactggccgactgg
gaagcggatgacctgatcgcctcctatgcccgtgctgcggtcacacggggcgggcgtgtc
accatcgtctcctccgacaaggatctgatgcagctgatccagccgggcgtggagatgcag
gatccgatcaaacaaaaaaccatcggccccgccgaggtaatggaaaaattcggcgtgacg
ccggagaaaatgatcgacgtgcaggcgttgatgggggacagcgtcgataatgttccgggt
gttcccgggattggccccaaaaccgctgcccaactcatcaacgactatggcgatctcgac
ggtgttctggctgcgctggagacaatgaagcccagcaaacgccgggacaatctcgttgcc
catgccgaggatgcgcggatttcccgtcaactggtggcactgagtcaggatgccccgcta
ccagtgccgatcaccgatctgagtgttcgtcagccggatgctgccgttcttcaggactgg
ctgaatgcgcaggggttccgcagcaccgcggcaaggctcgggcttgagacaggcggcagc
ccttcccccacctctcccgctgccagcagaactgcgaccaccgcaccggcagcagcctcc
cccctccccccttcctccgcaccgttcggcccttatgaaaccgtcacgaccgtcgaagca
ctggagccatggctggcggaagcacggaaagccgggctgttcgccatggataccgaaacc
gacgggctggatgcacaacaatgcaggcttgttggcatttcgctcgccattgcgccggga
aaggcctgctatatcccgctcgatcaccagaccacactggatcagccggtgcgccagccg
gccattgcggagattgccgccacgctcaacccaattctggccgatgcggcggttctgaaa
atcttccagaacggcaaattcgatctggccgtgctgcgccgtcatcaaatgccggtcatc
gccccgatcgacgacaccatgctgatttcctatgctcaggaagctggtgcgcacgggcat
ggcatggacgagctttccgtcctgcatctgggacacagcccgatttcctatgatcaggtg
accggcaccgggcgtaaccgtctgcccttcccgcaagttccaatcgacaaggccaccgcc
tatgccgccgaggatgccgatgtcacgctgcgtctgtggcatgcgctgcgtccccgcctg
cgcgaggctcaatccctgaccatctatgagcagatggagcggccgttggtgccggtgctc
tgcgccatggaagcagccggcattcgggtcgatgaagccgaattacggcgtatgtcggca
gatttcgccctgcgcatggcagatatggagacagaaattcatcagttggccggtcgcccg
ttcaacctcgccagtccgaaacagctgggagaggtgctgttcgacgaaatcggcctgacc
ggcggcaaacgatccaaaaccggcgcatggggcacggatgcggccacgttgcaggcgatt
gcggatgaaagcggtcatgccctgcctgcccgtatcctggactggcgccaactggccaag
ctgaaatccacctatgccgatgcgctggtggaggatgtcaatccacggaccgggcgggtt
catacctcgttccagatggcgatcaccaccacggggcgtctgtcctccaacgagccgaat
ctgcaaaatatcccgatccgcacggaggagggcagccgcatccggcgggctttcatcgcc
gatcccggccatgtgctgatcagcgccgattacagccagatcgaactgcgtctgctggcg
catgtcgccgatattccgcagttgaaggacagcttcgccaacggcgaggacattcatgcc
cgcaccgccagcgaagtgttcggcgtgccgatgcagggcatggattccctgacccgcaga
cgggcgaaggcgatcaatttcggcattatttacggcatcagcgcctttggtctggcacgg
tcgctggccatttctccgggcgaggcgcgtcagtatatcgatgcttatttcgcccgctat
cctggcatccgggactacatggaacggaccaaggaagaagcacgaatcaacggtttcgtg
gtcacgcccttcggacgccgctgctgggtgccgggcatcgccgaccgcaacccggcaagg
cgcggttatgcggaacggcaggcgatcaatgccccgcttcagggtggagccgccgatatc
atcaaacgcgccatggtccggctacccgccatgctcacagataacggttttcagacccgc
atgctgcttcaggtgcatgacgaattgctgttcgaggccccggaggccgaagccgaagct
gttgcccgtctggtcaccacgaccatgcaggatgctgcccggatttcagtgccgttggtg
gtggaaaccgggatcgggaccaactggggcgaggctcactga
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