KEGG   Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_2225
Entry
GbCGDNIH4_2225    CDS       T03156                                 
Name
(GenBank) Excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
gbs  Granulibacter bethesdensis CGDNIH4
Pathway
gbs03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gbs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    GbCGDNIH4_2225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gbs03400]
    GbCGDNIH4_2225
DNA repair and recombination proteins [BR:gbs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     GbCGDNIH4_2225
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      GbCGDNIH4_2225
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd Helicase_C UvrB ResIII UVR DEAD AAA_30 UB2H AAA_22 AAA_16 SWI2_SNF2 Kinesin DUF87 Microtub_bd DUF2963
Other DBs
NCBI-ProteinID: AHJ65286
LinkDB
Position
2496175..2498415
AA seq 746 aa
MLAAGRVAAHLPVMSQIAAHPMLFMPQKQPAKPVTRALEVVSDYKPDGDQPSAIRELVSG
LRQGERNQVLLGVTGSGKTFTMAKVIEEMQRPALILAPNKTLAAQLYGEMKSFFPNNAVE
YFVSYYDYYQPEAYVPRTDTYIEKDAQINEQIDRMRHAATQALLERNDVIIVASVSCIYG
IGSVETYAKMVVRLQVGGQIDRDALARALVDLQYRRNDAAFQRGTFRMRGETVDIFPASH
EDRAWRISLFGDEIDAISEFDPLTGNVTAKLEEAVVYANSHYVTPRPTLSQAIKEIKQEL
QQRLAEFDAEGKVLEAERLRQRVTFDIEMMETTGSCKGIENYSRYLSGRAPGDPPPTLFE
YLPDNAILIVDESHVTVPQIGGMERGDHARKSILSEFGFRLPSCIDNRPLKFDEWERFRP
ETVFVSATPGPWEMEQTGGVFAEQVIRPTGLIDPITEIRPVEHQVDDLLAEIRLVTAKGN
RVLVTTLTKRMAEDLTEYLTEHGVKVRYLHSDVDTLERIEIIRDLRVGVFDVLIGINLLR
EGLDIPECSLVAILDADKEGFLRSQTSLIQTIGRAARNVEGRVILYADTMTRSLTFAVEE
TARRRERQKAWNEAHGITPTTVRKQIGKMLESVFEQDYVTVAPTSATSAAEFVGKDLRAS
ITELERRMRAAAADLEFEEAGRLRDEIRRLEALEMGLPPVPAPASSMRAGAQKDGGRARK
DRTPQPLGPGGGGYDPSKVRGRRRRG
NT seq 2241 nt   +upstreamnt  +downstreamnt
ttgcttgcagcggggcgtgtggccgcccatcttcccgtcatgtcccagatcgccgcccat
cccatgctgttcatgccgcaaaagcagcccgcgaaacctgtcacgcgggcgctggaagtc
gtctctgactacaagcccgatggtgatcagccaagcgcgatcagggagctggtcagcgga
ctccggcaaggggaacgcaatcaggtgctgctgggcgtcaccggctccggcaaaaccttc
accatggccaaggtgattgaggaaatgcagcgcccggccctgattctcgcgccaaacaag
actctggcagcccagctctacggggagatgaagtcgttctttcccaataacgcggtcgaa
tatttcgtcagctattacgactactatcagccggaagcctatgttccgcgcaccgacacc
tatattgaaaaagacgcccagatcaacgagcagatcgaccggatgcgtcacgccgccaca
caggccctgctggagcggaacgatgtcatcatcgttgcctccgtctcctgcatttacggt
atcggctcggtcgagacttacgcgaagatggtggtgcggttgcaggtgggcggccagatc
gaccgggatgcgctggcccgggcgctggtcgatctgcaatatcgacgcaacgatgccgcc
ttccagcgcggcacgttcagaatgcgcggagagacagtcgacatcttccccgccagccat
gaggaccgggcctggcgcatcagcctgttcggtgacgagatcgacgccatcagcgaattc
gatcccctgaccggcaatgtgaccgcaaaactggaagaggctgtcgtctacgccaacagc
cactatgtcacacctcgccccacgctcagtcaggcgatcaaggaaatcaagcaggagctg
caacagcggctggccgaattcgacgccgaaggcaaggtgctggaggccgagcgcctgcgt
cagcgcgtgaccttcgatatcgagatgatggagaccaccggctcctgcaagggaatcgag
aattactcccgctatctttccggccgcgcaccgggagacccgccgccgaccctgtttgaa
tatctgccggacaacgccattctgatcgtcgatgaaagccatgtgaccgtaccgcagatc
ggcggtatggagcggggcgaccatgcgcggaaatccattctgtcggagttcggtttccgc
ctgccctcctgcatcgataacaggccgctgaaattcgatgaatgggagcgcttccggccg
gaaaccgtgttcgtcagcgcaacccccggcccgtgggagatggaacagaccggcggtgtg
ttcgccgaacaggtgatccgcccgaccgggctgatcgatccgatcacggagatccgcccg
gtggaacatcaggtggatgatctgctggcggaaatacgtctcgtcacggccaaaggaaat
cgcgtgctggtcaccaccctgaccaagcgcatggcggaagatctgactgaatacctcacc
gagcacggggtgaaggttcgctacctccactccgacgtggacacgctggaacggatcgag
atcatccgcgatctgcgcgtcggcgtcttcgatgtgctgatcggcatcaacctgctgcgg
gagggactggatattccggaatgctcactggtcgccattctggatgcggataaggaaggg
tttctgcgcagccagacctcgctgatccagaccattggccgcgccgcgcggaatgtggag
gggcgcgtgatcctgtatgccgataccatgacgcgctccctgaccttcgcggtggaggaa
accgcccgccgtcgggagcggcagaaagcgtggaacgaagcgcacggcatcacgccgacc
acggtacgcaagcagatcggcaaaatgctggaaagcgtgttcgaacaggattacgtcacg
gtcgcgccgacctccgccacctcggccgccgagttcgtgggcaaggatctccgcgcctcc
attaccgagctggaacgccggatgcgcgctgctgccgccgatctggagttcgaggaagcc
ggacgcctgcgcgacgaaatacgccgtctggaagcactggaaatgggcctgccccccgta
ccggcccctgcttcctccatgcgggctggtgcgcagaaagatggcggacgcgcccgcaag
gaccgcacgccgcaaccgctcggccccggcggcggaggttatgatccctccaaggtcaga
ggtcggcgacggaggggataa

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