Gottschalkiaceae bacterium SANA: SANA_04130
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Entry
SANA_04130 CDS
T10478
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gbx Gottschalkiaceae bacterium SANA
Pathway
gbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SANA_04130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbx03019
]
SANA_04130
03009 Ribosome biogenesis [BR:
gbx03009
]
SANA_04130
Enzymes [BR:
gbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SANA_04130
Messenger RNA biogenesis [BR:
gbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SANA_04130
Ribosome biogenesis [BR:
gbx03009
]
Prokaryotic type
rRNA helicases
SANA_04130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
UvrA_inter
WSD
Motif
Other DBs
NCBI-ProteinID:
BES63974
UniProt:
A0AA48R039
LinkDB
All DBs
Position
445581..447287
Genome browser
AA seq
568 aa
AA seq
DB search
MENLSVHDLTCANETTRALIEMGFETMTPIQTQAIPKAIEGVDLVGQAQTGTGKTAAFGI
PIFERIDASVKDTQALILCPTRELAVQVSEALNTIGKYHRGINVVPVYGGASIDRQIQLM
RRGAHIVVGTPGRVMDHLRRRTLKLNNLKMFTLDEADEMLNMGFREDIETVLETVPADAQ
RMLFSATMPKAILSIIKNYLREPTMIRIQAKEITTDTIQQLYVKTRNRDREAILTRFIEL
YSATRTIVFCNTKRKVDELVEWLSSRGYQAERIHGDMDQSARMNVIRRYKEGKVQVLVAT
DVAARGLDIPAVELVFNFELPRHEEYYVHRIGRTGRAGLKGTAISFVTAKEMYTLKSIMR
YTKKTIEEVLIPKKETIEKIHMDRLLAEVKEIAENEDMSKALETMQGQEGFLGFETMAAA
LLTKMLKGSAIEEIDNAGMSGFRQSDRKVRGVNGRVKLFINIGRKEKVDPRDLVRVITKE
TDVTGREIGKINVYNEFSFIEVPEEHAKHVIQRLRKKTINGTRINVEISREKKSSGNRDG
GSHSHNKRREYGKFNKKDGSKPKKRTHA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggagaatttatcagtacatgatttaacctgtgcgaatgagacaactcgtgcgttgatc
gaaatgggttttgaaacaatgaccccgatccaaacgcaagcgatccccaaagcaattgaa
ggagttgacttagttggacaggcacaaacaggaacgggaaaaacagccgcattcggcatt
cccatttttgagcgcattgatgcatcagtgaaagatacacaggcgttaattctttgccca
acgcgagaattggcagtccaagtatcggaagcactgaatacgattggcaagtaccatcga
ggaatcaatgtggttcctgtttatggaggcgcgtctattgaccgccaaatccaactaatg
cgacgtggagcgcatattgttgtcggaacgccgggacgggtcatggaccatctccgacga
agaaccttgaagttaaataatcttaagatgtttacccttgatgaagcggatgaaatgctg
aatatgggtttccgagaggacatcgaaaccgtattagaaacggttcctgcagatgcgcag
agaatgctattctcagcgactatgccgaaagcgatcttgtctatcatcaagaattatttg
agagagccaacgatgatccgcattcaggcaaaagagattacgacggatacaatccaacaa
ttgtatgtgaagacaagaaatcgagatcgtgaagcaattttgactcgatttatcgaattg
tatagtgctacaagaaccattgtgttctgtaacaccaaacgaaaagttgatgaactggtt
gagtggttgtcatccagaggctatcaagcggaacgaatccatggggatatggatcaatcg
gctcgcatgaacgtcattcgtcgatacaaagaaggcaaagtgcaagttttggttgcaaca
gatgttgcggcacgtggtttggatattccagctgtagagctcgtattcaacttcgaactt
cctcgccatgaagagtattatgtgcatcgtattggccgaacgggccgtgctggattaaag
ggaactgctatttcttttgtaactgcaaaagagatgtataccctgaagtcaatcatgcga
tacacgaaaaaaacgatcgaagaagtgcttattccgaaaaaagaaaccattgagaagatt
catatggatcgacttttggcggaagtgaaggaaattgctgaaaatgaagatatgagcaaa
gcacttgaaaccatgcaaggacaagaaggcttcttgggttttgaaacaatggcagctgca
ttgttgaccaagatgttaaaaggcagcgcaatcgaagagattgacaatgctggtatgagt
ggtttccgtcagtctgatcgcaaagttcgcggcgtaaacggtcgagtaaaattatttatc
aacattggtcgaaaagaaaaagtggatcctcgtgatttggttcgcgtgatcacaaaagaa
actgatgtgaccggaagagaaattggcaagatcaatgtctacaacgagttctcttttatt
gaagtgccagaagagcatgccaagcatgtgattcagcgccttcgcaagaagacaatcaat
ggaacacgaattaatgtagaaatttctcgtgaaaagaaatcaagcggcaatcgtgatggc
ggaagtcatagtcataacaagcgtcgagagtatgggaaatttaacaagaaagatggatca
aagccaaaaaagagaacacacgcgtaa
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