Gottschalkiaceae bacterium SANA: SANA_14150
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Entry
SANA_14150 CDS
T10478
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gbx Gottschalkiaceae bacterium SANA
Pathway
gbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SANA_14150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbx03019
]
SANA_14150
Enzymes [BR:
gbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SANA_14150
Messenger RNA biogenesis [BR:
gbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SANA_14150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BES64976
UniProt:
A0AA48LE80
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All DBs
Position
1541552..1542964
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AA seq
470 aa
AA seq
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MLFNELQLIEPIQEALVTKGYTKATPIQSKAIPALLKGEDMLGCAQTGTGKTAAFSIPIL
QNLATKQGKQNGKRKIKALVVAPTRELALQIGDSFREYGTNLEQRTTVIFGGVGQKPQTN
RLEKGVDILVATPGRLLDLIGQGYIDLGYVEHFVLDEADQMLDMGMLRDVKRIIKYLPAK
RQTMFFSATMPASIASFADTILKQPVKITIKPEYSPIDIIEQEVYFIDKGNKTALLIDLL
KDRKYDSVLVFSRTKHGADKIVKALARQGLDSVAIHGNKSQNKRQKALKEFKERTVRILV
ATDVAARGLDISELSHVINYNLSEVPETYVHRIGRTGRAGLGGKAISFCDFEEKDLLRSI
EKLISKKLPEVKGHAYPLRDTTIKPKAKQGQRPQRRNQGNAASNGSSKPSRTNNRKTKST
QSNDRRSKSTQTDGRKSKSTQGNGNKAARGSFKQKRSSGGGGNEIRTSGR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
ttgttatttaatgaactacaattaatcgagccaattcaagaggctcttgtaactaaagga
tatacaaaggcaacccccatacaaagtaaggcaattccagcgcttttaaagggtgaggat
atgttgggttgtgcccaaacaggcacaggaaaaactgctgctttttcgattccaatactg
caaaaccttgcaacgaaacaaggaaagcaaaacggaaaacgtaaaattaaggcattggtt
gttgcaccaactcgtgagttggcgcttcaaatcggagattcgttcagagagtatggtacg
aatctggaacaaagaacgactgtaatttttggtggcgtgggtcaaaaaccacaaactaac
cgattagaaaaaggcgtggatatcctagtggcaacaccaggtagactccttgacttaatc
ggacagggttacattgatcttggttatgttgagcactttgtgcttgatgaagcggatcaa
atgttagacatgggtatgcttcgcgatgtaaaaagaattatcaagtatttgcccgcgaaa
agacaaaccatgttcttttccgcaacgatgccagcttcaatcgcatcatttgcagatact
attttgaaacagccagtaaaaatcacaatcaagccagagtattctcccattgatattatt
gagcaagaagtttactttattgataaaggaaacaaaactgccttattgattgatttgttg
aaagatcgaaaatatgattctgtccttgttttttcaagaaccaaacatggtgcagataaa
attgtaaaagctttggctagacaagggcttgattccgtagcgattcacggaaacaaatca
caaaataaaagacaaaaggcgctcaaggagtttaaagaaagaaccgtgcgaattcttgtt
gcaacagatgtagcagcacgtggtttggacatttcggaactttctcatgtgatcaactac
aacctttcggaagtccctgaaacctatgtgcaccgaattggtcgtacgggtcgagcaggt
cttggtggcaaagccatttcattctgtgattttgaagaaaaagatttgttgagaagtatt
gaaaagttgattagcaaaaaattgccagaagtgaaaggtcatgcttacccattgcgcgac
acaacgatcaaaccaaaagcgaagcaggggcaacgaccacagcgaagaaatcaaggcaat
gcagcttcaaacggaagttctaagccttctcgaacaaataatagaaaaacgaaatcgact
caatcgaacgacagaagatcgaaatccacgcaaaccgatggtcgaaagtcaaaatcgaca
caagggaatggcaacaaagcggcaagaggttcgtttaaacaaaagcgaagcagcggcggc
ggtggaaatgaaattcgaacatcaggtcgttag
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