Gottschalkiaceae bacterium SANA: SANA_14520
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Entry
SANA_14520 CDS
T10478
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gbx Gottschalkiaceae bacterium SANA
Pathway
gbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SANA_14520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbx03019
]
SANA_14520
Enzymes [BR:
gbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SANA_14520
Messenger RNA biogenesis [BR:
gbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SANA_14520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BES65013
LinkDB
All DBs
Position
1580126..1581520
Genome browser
AA seq
464 aa
AA seq
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MISQDLKINPSILKAVDEQNYKKATPIQEKAIPIVLSGKDLLACAQTGTGKTAAFALPIL
HMLSKEWGKGEDFHPIRALVLAPTRELALQIGDSFKSYGQYLKMQTAVVYGGVPINRNIK
ALKREPSILVATPGRLLDLIDEGMVDLDRVEFLVLDEADRMLDLGMIQDVKAILSSLPAE
RQNLLFSATLPDEISKLSTSILKNPARVEVKGKPVKKAGIKQKLYYVDEPDKISLLLYLL
KDQSFDSVLVFVRTKKKADQVLKAIQVANISVGVIHGDKNQTDRVQALSLFKKKEIRVLV
ATDVAARGIDIDRLSHVVNLNIPAVSETYIHRIGRTGRAGMSGIAISFCNNQEIPRLKAI
EKLQGIELACVEEHPYVLYNIAIKQSREKYREKPMSKDKPKKRNEKPGERKRSEKSNDRK
KNEKANGKKRNEKSSNQKKKFGNSKSENQQANRSKNRPKGKRNK
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatatctcaagacttaaagataaatccatccatccttaaagcagtagacgagcaaaat
tataaaaaagcaacgcccatccaagaaaaggcaataccgattgtacttagcggcaaggat
ttgcttgcttgtgcacaaacgggaacaggaaaaacggctgcctttgcgcttccgatcctg
catatgctttcgaaagagtggggaaaaggagaagattttcatccgattcgagcattagtt
ttagcaccgacgcgggaattggcacttcaaattggtgatagttttaaaagctatggtcaa
tatttaaaaatgcaaactgctgttgtttatgggggagtcccaatcaatcgcaatatcaag
gcattgaaaagagagccaagcatattggttgcgacgccagggcgacttttggacttgatc
gatgaaggcatggttgacttggaccgtgttgaatttcttgtactggatgaggcggatcgc
atgctagatctaggtatgattcaagatgtaaaagcaattctatcgagtttaccagcagag
agacagaatttattgttttctgctacgttgccggacgaaatttcgaaactttctacttct
attttgaagaatcctgctagagtggaagtaaaaggcaagcctgtaaaaaaagctgggatc
aagcaaaaactttattacgttgatgaaccagataaaatttctttgttgctgtatttacta
aaagaccaatcctttgattcggttttggtttttgtacggacaaagaagaaggccgaccaa
gtactaaaagccattcaagtagccaatataagtgttggtgtgatccatggcgataaaaat
caaacggatagagtccaagctttgtcgctttttaagaagaaagaaatacgagtattggtt
gcaacagatgttgcggcacggggaattgatatcgatcgattgtctcatgtagtgaatctg
aatattccagctgtttcggaaacctatattcatagaattggtcgaaccggaagagccgga
atgagcggtattgccatatctttttgcaacaatcaagaaatccctcgattgaaagcgatt
gaaaaacttcaaggcattgagcttgcatgcgttgaagaacatccatacgtgctttataat
attgcaattaagcagagccgggaaaaatatcgagagaagccgatgtcgaaagacaaaccg
aaaaagagaaatgaaaaacctggcgaaagaaagagaagcgaaaagtccaacgatagaaag
aaaaacgaaaaagctaacgggaagaaaagaaatgagaaatcgagtaatcaaaaaaagaag
tttggaaattccaagtccgaaaatcaacaggctaatagatccaagaacaggccgaaaggt
aaaaggaacaagtaa
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