Gottschalkiaceae bacterium SANA: SANA_21790
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Entry
SANA_21790 CDS
T10478
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
gbx Gottschalkiaceae bacterium SANA
Pathway
gbx02020
Two-component system
gbx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gbx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SANA_21790 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SANA_21790 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbx03021
]
SANA_21790 (rpoN)
Transcription machinery [BR:
gbx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SANA_21790 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
LacI
HTH_21
HTH_12
HTH_31
HTH_Tnp_ISL3
TetR_N
MarR_2
HTH_Crp_2
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
BES65740
LinkDB
All DBs
Position
complement(2372510..2373868)
Genome browser
AA seq
452 aa
AA seq
DB search
MKLEFGLKLEQKQKLVMTQQLRQAIELLQFNQLQLVDFINQEMDTNPLLEMKEVEQETGE
LDVEDWKEYLRSNDQADYVNFGSEQRGEDASPFESRHAAIVTLKELLRKQLYCSKLKDEQ
VRIGEAIIERIDAQGYFKSEMADLAYQIRAYEEEVEIMLYIIQSFDPIGVGARDLSECIE
LQLRERGIQQTLVYEIVKDELALIAERRYEILAKKFNVQEDEIEAIAELIQSCNPKPGSV
YPSEDELVRYIRPDVYVTLGDEGYEIRANESLMPRLYVSPKIQALLKSGEEAEFVKAYLD
RALWVVKMIEQRRQTVIRIAGAIVDVQASFFVEGDKGLRPLTMKQVAEEADVHESTVSRV
VNGKYMQTPVGLYEMKYFFTTNLGGGEDGVSSKSVQALIREMTEEEDKKKPLSDQKIAEE
LAKREIKVSRRTVAKYREEMGILSSAKRKRRG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggaatttggattaaagctagaacaaaaacaaaaattagtgatgacacagcaa
ttgcgtcaggccattgagctactccaattcaatcaattgcaattggttgatttcattaat
caagagatggacacaaatcctcttttggagatgaaagaagtagaacaggaaactggcgaa
ttggatgttgaggactggaaagaatacttgcgaagcaatgatcaggcggattatgtgaat
tttggcagcgagcaacgcggagaagacgcttctcccttcgaatctcgtcatgctgcaatc
gtcaccctgaaagaattgttgcgcaagcaattgtattgttcaaaattgaaagatgagcag
gtgcgaatcggcgaggcgattattgagcggattgatgcccagggatatttcaagtcggaa
atggccgatctggcctatcaaatccgtgcttacgaagaagaagtagaaattatgctgtat
attatccaatcctttgatccgattggcgttggggcgagggatttgtcagaatgtattgag
cttcaattgcgggaacgaggcattcaacaaacattggtgtatgaaattgttaaagatgag
ttggccttgattgcggaacgcaggtatgaaattctcgccaaaaaatttaacgtgcaagag
gatgagattgaagccattgcagaattgattcaatcctgtaatccaaaacctggatcggtt
tatccgtcggaagacgaattggtccgctatattcgacctgacgtctatgtaaccctaggt
gatgaaggctacgagattcgagccaatgaatctttgatgccgcggctttatgtcagtccg
aagattcaggccttgttgaaaagcggggaagaagctgaatttgttaaggcctatttggat
cgcgctctttgggttgtgaagatgattgagcaaaggcgacaaactgtgattcgaatagcc
ggcgccattgtcgacgtgcaagcatcattctttgttgaaggagacaaaggcttgcgtcca
ttgaccatgaaacaggtggcggaagaagctgatgtgcatgagtctaccgttagccgagtg
gtcaatggaaaatatatgcaaaccccagttggtttgtatgaaatgaagtacttctttaca
acaaatcttggcggtggagaagacggtgtcagttccaaaagtgtgcaagcgttgattcga
gagatgacagaagaagaggataaaaagaaacccctgagcgatcaaaagattgccgaagag
ttggcaaaacgtgagatcaaggtatcccgcagaacggttgccaaataccgagaggaaatg
ggaattctttcttcagcaaaaagaaagcgtcgcggataa
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