Gottschalkiaceae bacterium SANA: SANA_24160
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Entry
SANA_24160 CDS
T10478
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gbx Gottschalkiaceae bacterium SANA
Pathway
gbx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SANA_24160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbx03400
]
SANA_24160 (mfd)
Enzymes [BR:
gbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SANA_24160 (mfd)
DNA repair and recombination proteins [BR:
gbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SANA_24160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BES65977
UniProt:
A0AA48LG41
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Position
complement(2565018..2568506)
Genome browser
AA seq
1162 aa
AA seq
DB search
MQGLWGKITEQTKAYADITHAIDNGSFPISLHGLSEEALFQLFARYADECQVVLVFSQDH
QARAARTMIQSFVTGIVHYFPARPTYFYDIEAFSHENMNQRLRTLHHLQRGSKGIYVTCT
EAMMNPMLPKKQYGELRLVVGQMIEPQKVIESLVKLGYRRETMIEGPGQFSARGGIIDCF
PSDAEDPLRLEFFDIEIDSIRSFDLGTQRSFENSQEALIPAAVEFILTQDQRQRVAVGIE
KDLAETTKKEKHGAERTKRVEKFEKVIHQIESDLPLPSAALCYPYLEESESLLNWLQADA
VLVLEEPDRILEAGRDQQHQFHHRLEELHLAGETLSRHAEALLPFEQLPLENRRLITSTR
LLKNSRFFAPKALVQVRTKANPVFHRKFELLAQETKRLLARDGTVVFFTGSTERALALKQ
YLEEARIPVLSDFQTQPGFVTISKESLNQGFEYIDEKIFLFGEAEVYGGSKRKRRKREKE
KSRRIETFMDLKVGDYVVHEEFGIGQYQGIEQKVILGIKRDYLIVQYRGTDRLYVPVDQM
QILQKFIGGDAGSPRLNKMGSDDWKRTKQTARKAIEIMARELLEHYAKRESVKGYAFSDD
NEWQRQFEDLFPYEETQDQLQCIEEIKSDMQKPSPMDRLLCGDVGYGKTEVALRAAFKAV
LDGKQVAILVPTTILAQQHYNTFLSRFQEFPVKVEMLSRFRTAKQQQSIFRDVKAGNIDV
IVGTHRILSKNLQYKDLGLLIVDEEQRFGVRHKEAMKMMKASVDVLTLSATPIPRTLHMS
MIGVRDLSVIDEPPEERLPVQTFVVEYQEELVRDAIRRELEREGQVYFVFNRVKGIRSMQ
GKLQKLIPEARIAVAHGQMGERELEAVMVAFLDGEIDVLISTTIIETGMDIPNVNTMIIF
DADRLGLSQLYQLRGRIGRSNRLAFAYFTFQKNKVLSEVAEKRLKAIREFTEFGAGFKIA
MRDLEIRGAGNLLGAEQHGHMASIGYDLYVKYLEQAVSLYTGSLELGSEESESKLELQVD
AYIPDEYIQDAEQKIRMYKRIATIESTADYSEILDELIDRFGEPPAALINLMRIAKVRAG
AKHAGFSTISHTKKGVVMNFAKALSFTPELGKMLMDHYARMVDFDLSTEFPKIFLLKRDC
TAEEALLLMEEAVGMICEFFKN
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgcagggactatggggaaaaattacagaacagacaaaagcatatgctgacatcacccat
gccattgataatggctcctttccgatttccttgcatggattgtcggaggaggctttattt
caactctttgcccgatatgctgatgagtgtcaagtggttctggttttttcccaggaccat
caagcgcgggcggcgaggaccatgattcaaagttttgtgacgggaattgtgcattatttt
ccggcacgtccaacttatttttatgatattgaagcattcagtcacgagaatatgaatcaa
cggcttcgtaccttgcatcatttgcagcggggaagcaagggcatctatgtaacctgtacg
gaagcaatgatgaatcccatgctgcccaagaaacaatacggggagttgcggctggtcgta
ggtcagatgattgaaccgcagaaagtcattgaatctttggtaaaattagggtatcggcga
gaaacgatgatcgaaggtcctggccagtttagcgctcggggcgggattattgattgtttt
ccgtcggatgcggaagacccgttacggttggagtttttcgacattgaaatcgattcaatt
cgaagttttgacttgggaactcaacggtcctttgaaaatagccaggaagctttgattccg
gcggctgtagaatttatcttgacccaggatcaaagacagcgggttgccgtggggatcgaa
aaggacttggccgaaacaaccaaaaaagaaaagcacggagcagagcgaaccaagcgggtg
gaaaagtttgagaaggtgatccaccagatcgaaagcgatttgccccttcccagtgcggcc
ctttgctacccttatttagaggagtcagaaagtttgctgaactggttgcaggccgatgcg
gtccttgtgttagaggaaccggatcgaattttggaagctggacgggatcagcagcatcaa
ttccaccatcgattggaggagttgcatcttgccggcgagactttgtcccgccatgcggag
gcactattgcctttcgaacaattgcccctggaaaatcgtcgactgatcacctcgactcga
ttgttgaaaaacagtcgattctttgcgcccaaggcactggtgcaagtacggacaaaagcc
aatccggtttttcatcgtaaatttgagcttttagcccaagagacaaagcggcttttggcg
cgagatggcaccgtggtcttttttacggggagtacggaaagagcgcttgctttaaaacag
tatttggaagaggcgcggattcccgttctatctgactttcaaacgcagccgggatttgtt
accataagcaaggaatccttgaatcagggatttgagtatattgatgagaaaatatttctc
tttggtgaagctgaagtttatggcggaagcaaacgcaaacgtcggaaacgagaaaaagag
aaaagtcgtcgaattgaaacctttatggatttaaaggtgggcgattatgtcgttcatgag
gaatttggaatcggtcaataccaaggcattgaacaaaaggtgattttgggaatcaaacgg
gattatttgattgtgcagtatcgaggtacagatcgtctttatgtacctgtggatcaaatg
caaattcttcaaaagttcattggtggagatgcggggtcaccgcggcttaacaagatgggt
tcggacgattggaaacggaccaaacaaacggctaggaaggccattgagattatggctcga
gaattgctggagcactacgccaagcgggaatcggtgaagggatatgccttcagcgatgac
aacgaatggcagcgccagttcgaggatctctttccctacgaagaaacccaggatcaattg
caatgtatagaggaaattaagtccgacatgcaaaaaccaagcccaatggatcgcctgctt
tgcggcgatgttggctatgggaaaacagaggttgctttgcgggctgctttcaaggctgtt
cttgatggaaaacaggtggctattttggtgccgaccaccattttggcacagcagcactat
aacacctttctttctcgttttcaggaatttccagtaaaagtggagatgctgagtcgattc
cgtacggccaagcagcagcagtcgatttttcgggatgtgaaggctggaaatattgatgtg
attgttggtacccatcgaattctctcaaaaaatttgcaatataaggatctgggtcttttg
attgtggatgaggaacaacgattcggggttcgtcacaaagaggccatgaaaatgatgaag
gcttcagtagatgtactgaccttgtcagcgacgcctattcccaggaccttgcatatgtct
atgattggggtgcgtgatctctctgtgatcgatgagccaccagaagagcgactgccggta
cagacctttgttgtcgagtaccaagaggaactggtgcgtgatgcgatacgacgcgaattg
gagcgggaaggtcaggtgtactttgtcttcaaccgcgtgaaaggaattcggtccatgcag
gggaaactgcaaaaattgattccggaagcgaggatcgccgtcgcccatgggcagatgggg
gaacgggaactggaagccgtgatggttgcctttttagacggagaaatcgatgtcttgatc
agcaccacaattattgaaaccggtatggatattcctaatgtcaataccatgattatcttc
gacgccgatcgattggggctttctcaattgtatcaattgcggggacggattggccgttcc
aatcggcttgcctttgcctatttcacttttcaaaagaataaggttttgtccgaggtagcg
gagaaacgattgaaagcaattcgggagttcacggaattcggagcgggcttcaagattgcc
atgcgggatttggaaatccgaggtgcgggaaatttgttgggggctgaacaacatggtcat
atggcttccattggatatgatctctatgtgaagtatttggagcaggcagtgagcctttat
acgggaagtttggaattgggatcagaagaaagcgaatccaaactggaattgcaggtggac
gcctacattcctgatgaatatattcaggatgcggagcagaaaattcgaatgtacaaacgc
atagcgacgattgagtcaacggcggattattccgagattttagatgaactgattgatcga
ttcggtgaaccgccagcagcattaattaatctgatgcggattgccaaggtgcgtgcgggt
gcaaagcacgcgggattctctacaatttctcataccaagaagggtgttgtgatgaatttt
gccaaggctttgtcctttacgccggaactgggcaagatgttgatggatcattatgcacgc
atggtagattttgacttatcgacggaatttccaaagatctttttactcaagcgagactgt
acagccgaggaagctttacttctaatggaagaagctgtggggatgatctgtgaatttttt
aagaattga
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