Geobacter benzoatilyticus: JZM60_03250
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Entry
JZM60_03250 CDS
T07995
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
gbz
Geobacter benzoatilyticus
Brite
KEGG Orthology (KO) [BR:
gbz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gbz03016
]
JZM60_03250 (truD)
Enzymes [BR:
gbz01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
JZM60_03250 (truD)
Transfer RNA biogenesis [BR:
gbz03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
JZM60_03250 (truD)
Prokaryotic type
JZM60_03250 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
QSV46309
LinkDB
All DBs
Position
complement(686364..687566)
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AA seq
400 aa
AA seq
DB search
MSGDKRYLTSGLPGTGGTIKDSIEDFCVEEIPLYLPCGEGEHLYTVIEKRGVTTLDAIRR
LARALKLSERDVGYAGMKDARGVTRQTVSLPRVKPDEVLALELPGISVLSAVRHRNKLKL
GHLAGNRFRIRVRGVVPDALSRAETILAVLARRGVPNRFGEQRYGVQGNSHLIGRAMLAG
DWRAAVDLVIGYPEKVSAEAWRSAIEAYQRGELEASLQLFPGHCRTERDIIQRLVKRPDD
FEGAFRAVNPRLKKLYLSACQSALFDRVVEARLDSLDIVRGGDLAWKHANGACFLVTDAA
AEAPRAEHFEISPSGPLFGCRMTTPEGEEQVLEQSILADEGLDPAAFDLSGGLRMEGERR
PLRVPLENPQASLDDGGLILEFSLPKGSYATAVLREIVKA
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgataagcgctacctgacttccgggctgcccggcaccggcggtaccatcaag
gattccatcgaggatttttgcgtggaggagattcccctctacctcccctgcggcgagggg
gagcatctctataccgtcatcgaaaagcggggggtgacgaccctggatgccatccgccgc
ctggcccgggcactgaaactctccgagcgggacgtggggtatgccggcatgaaggatgcc
cgtggtgtgacccgccagaccgtgtcgctcccccgggtgaagccggatgaggtgcttgcg
ctggagcttcccggcatcagcgttctttcggcggtgcggcaccggaacaagctcaagctc
ggccatctggcgggaaaccgcttcaggattcgggtgcggggcgtggtgcccgacgccctc
tccagggccgagacaattcttgcggtgctggcgcggcgcggcgttcccaaccgtttcggc
gaacagcgctacggcgttcagggtaacagccatctcatcggccgggccatgctggccgga
gactggcgtgccgcggtggaccttgtcatcgggtatccggagaaggtgtcggcggaggcg
tggcggagcgccatcgaggcgtaccaacggggggaactggaggcgagcctgcaactcttc
cctgggcactgccgcaccgagcgggacatcatccagcgcctcgtgaagcgccccgacgat
ttcgagggagcctttcgcgcggtcaatccccgcctcaaaaagctctacttatcggcctgc
cagtcggccctcttcgaccgggtggtggaggcgcgcctcgattccctcgatatcgtccgg
ggtggggatctggcctggaaacacgcaaacggcgcctgctttctcgtgacggatgctgcg
gccgaggcccctcgggcggagcactttgaaatctctccctccggacctctcttcggctgt
cggatgaccacgcccgaaggggaggaacaggtgctggagcagtctatccttgcggatgaa
gggcttgatccggcggccttcgatctctccggcggcctccggatggagggggaacggcgt
cctctccgggtcccattggagaacccgcaggcttctctggatgacggtgggctgattctg
gagttttctcttcccaaggggagctacgccacggcggtcctgcgggagattgtaaaggcc
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