Geobacter benzoatilyticus: JZM60_07495
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Entry
JZM60_07495 CDS
T07995
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gbz
Geobacter benzoatilyticus
Pathway
gbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JZM60_07495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbz03019
]
JZM60_07495
Messenger RNA biogenesis [BR:
gbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JZM60_07495
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QSV47094
UniProt:
A0ABX7Q6L3
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All DBs
Position
1599632..1601308
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AA seq
558 aa
AA seq
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MDTELNHSDGLRVIPLGGVGEIGLNMMVYEHGDDIIVVDCGLMFPEPSMLGIDIVIPDIT
YLRDRADRVRGIFLTHGHEDHIGALPYVLPELPVPLYGTALTLGFVREKLKEFDLDSAVD
LNVVKPRESVTVGPFKVEFIRVSHSIVDGCALAIRTPEGVVIHTGDFKVDQTPVDGELTD
LVSFARYGAGGVLALFSDSTNVEREGYTLSERLVGEAFDEIFPRCPGRVIVAAFSSNVHR
VQQAVDAAARCGRKVLLNGRSMVANVAIARQLGYLRIPDEILTDVREMPHLPPEQVCMIT
TGSQGEPMSALTRIAMDDHKQIKLEAGDTVILSSRFIPGNEKTISDLINHLYRRGAEVYH
EKVSEVHVSGHASQEELKLMLNLVRPKFFVPVHGEYRHLVKHARLAQRVGVPEENCMVVE
NGAVIRFAGGEAEVAGSVENGRVFIDGKGIGDVGEVVLKDRKHLSEDGMVVVIIAINQQT
GEVIYGPDIVSRGFVFEDESQEYLDETKKIVLDLLAGMAPEVLNDWGEVKQEVRRVLRRF
FNKTIERRPVILPLILEM
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggatacagaactgaaccactcagacggcctgcgcgtcatccccttggggggggtgggg
gagataggcctcaatatgatggtctatgagcatggcgacgatatcatcgtggtcgactgt
ggcctcatgttccccgaaccgagcatgctgggcatcgatatcgtcatccccgacatcacc
tatctgcgggaccgggccgaccgtgtccggggcatcttcctcacccacggccacgaggac
cacatcggcgcgctcccctatgttcttccggagctccccgtacccctttacggcacggcc
ctcaccctcggcttcgttcgcgaaaagctgaaggagttcgacctggacagcgccgtggac
ctgaacgtggtgaaaccgcgggaatcggtgacggtcggccccttcaaggtggaattcatc
cgggtctcccattccatcgtcgatggttgcgccctggcgatcaggacccccgagggggtg
gtgatccataccggcgatttcaaggttgaccagactccggtggacggggagctaacggac
cttgtttccttcgcccgctatggcgccggaggcgtgctggcgcttttttccgactccacc
aacgtggagcgggaggggtacaccctgtcggagcggcttgtgggggaggctttcgacgag
atattcccacggtgtccggggcgggtcatcgtggccgccttctccagcaacgtccaccgg
gtgcagcaggcggtggacgccgcggcccgctgcggccggaaggtcctcctgaacggccgc
tccatggtggccaacgtggccatcgcccgccagttgggttacctgcggattcccgacgaa
atcctcaccgatgtccgggagatgccccaccttccccccgaacaggtctgcatgatcacc
accggctcccagggagagcccatgagcgccctgacccggattgccatggacgaccacaag
cagataaagcttgaagcgggggacacggtaatcctctcctcccgcttcatccccggaaac
gagaagactatctccgacctcatcaaccacctctaccgccggggggccgaggtctaccac
gaaaaggtatccgaggtccacgtgtcggggcatgcctcccaggaagagctgaaactgatg
ctcaacctggtgcgccccaaatttttcgtaccggtccacggcgaataccgccacctggtg
aaacatgcacggctggcccagcgggtcggggtccccgaagagaactgcatggtcgttgag
aatggcgcggtcatccgctttgccggcggagaagcggaggtggccggctccgtggaaaac
ggccgggtattcattgacggcaaggggatcggcgatgtgggggaggtggttctgaaggac
cgcaaacacctctcggaggatgggatggtggtggtcatcatcgccatcaaccagcagacg
ggggaggtcatctacggccccgacatcgtttcccgcgggtttgtctttgaggatgagagt
caggagtacctggacgagacgaagaaaatcgtcctggacctgctggccgggatggccccc
gaggtccttaacgactggggcgaagtgaagcaggaagtgcggcgcgttctgcggcgcttt
ttcaataagaccatcgagcggcggccggtgattctgccgctgatactggagatgtag
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