KEGG   Geobacter benzoatilyticus: JZM60_07495
Entry
JZM60_07495       CDS       T07995                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
gbz  Geobacter benzoatilyticus
Pathway
gbz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gbz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JZM60_07495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gbz03019]
    JZM60_07495
Messenger RNA biogenesis [BR:gbz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     JZM60_07495
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: QSV47094
UniProt: A0ABX7Q6L3
LinkDB
Position
1599632..1601308
AA seq 558 aa
MDTELNHSDGLRVIPLGGVGEIGLNMMVYEHGDDIIVVDCGLMFPEPSMLGIDIVIPDIT
YLRDRADRVRGIFLTHGHEDHIGALPYVLPELPVPLYGTALTLGFVREKLKEFDLDSAVD
LNVVKPRESVTVGPFKVEFIRVSHSIVDGCALAIRTPEGVVIHTGDFKVDQTPVDGELTD
LVSFARYGAGGVLALFSDSTNVEREGYTLSERLVGEAFDEIFPRCPGRVIVAAFSSNVHR
VQQAVDAAARCGRKVLLNGRSMVANVAIARQLGYLRIPDEILTDVREMPHLPPEQVCMIT
TGSQGEPMSALTRIAMDDHKQIKLEAGDTVILSSRFIPGNEKTISDLINHLYRRGAEVYH
EKVSEVHVSGHASQEELKLMLNLVRPKFFVPVHGEYRHLVKHARLAQRVGVPEENCMVVE
NGAVIRFAGGEAEVAGSVENGRVFIDGKGIGDVGEVVLKDRKHLSEDGMVVVIIAINQQT
GEVIYGPDIVSRGFVFEDESQEYLDETKKIVLDLLAGMAPEVLNDWGEVKQEVRRVLRRF
FNKTIERRPVILPLILEM
NT seq 1677 nt   +upstreamnt  +downstreamnt
atggatacagaactgaaccactcagacggcctgcgcgtcatccccttggggggggtgggg
gagataggcctcaatatgatggtctatgagcatggcgacgatatcatcgtggtcgactgt
ggcctcatgttccccgaaccgagcatgctgggcatcgatatcgtcatccccgacatcacc
tatctgcgggaccgggccgaccgtgtccggggcatcttcctcacccacggccacgaggac
cacatcggcgcgctcccctatgttcttccggagctccccgtacccctttacggcacggcc
ctcaccctcggcttcgttcgcgaaaagctgaaggagttcgacctggacagcgccgtggac
ctgaacgtggtgaaaccgcgggaatcggtgacggtcggccccttcaaggtggaattcatc
cgggtctcccattccatcgtcgatggttgcgccctggcgatcaggacccccgagggggtg
gtgatccataccggcgatttcaaggttgaccagactccggtggacggggagctaacggac
cttgtttccttcgcccgctatggcgccggaggcgtgctggcgcttttttccgactccacc
aacgtggagcgggaggggtacaccctgtcggagcggcttgtgggggaggctttcgacgag
atattcccacggtgtccggggcgggtcatcgtggccgccttctccagcaacgtccaccgg
gtgcagcaggcggtggacgccgcggcccgctgcggccggaaggtcctcctgaacggccgc
tccatggtggccaacgtggccatcgcccgccagttgggttacctgcggattcccgacgaa
atcctcaccgatgtccgggagatgccccaccttccccccgaacaggtctgcatgatcacc
accggctcccagggagagcccatgagcgccctgacccggattgccatggacgaccacaag
cagataaagcttgaagcgggggacacggtaatcctctcctcccgcttcatccccggaaac
gagaagactatctccgacctcatcaaccacctctaccgccggggggccgaggtctaccac
gaaaaggtatccgaggtccacgtgtcggggcatgcctcccaggaagagctgaaactgatg
ctcaacctggtgcgccccaaatttttcgtaccggtccacggcgaataccgccacctggtg
aaacatgcacggctggcccagcgggtcggggtccccgaagagaactgcatggtcgttgag
aatggcgcggtcatccgctttgccggcggagaagcggaggtggccggctccgtggaaaac
ggccgggtattcattgacggcaaggggatcggcgatgtgggggaggtggttctgaaggac
cgcaaacacctctcggaggatgggatggtggtggtcatcatcgccatcaaccagcagacg
ggggaggtcatctacggccccgacatcgtttcccgcgggtttgtctttgaggatgagagt
caggagtacctggacgagacgaagaaaatcgtcctggacctgctggccgggatggccccc
gaggtccttaacgactggggcgaagtgaagcaggaagtgcggcgcgttctgcggcgcttt
ttcaataagaccatcgagcggcggccggtgattctgccgctgatactggagatgtag

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