Geobacter benzoatilyticus: JZM60_08730
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Entry
JZM60_08730 CDS
T07995
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gbz
Geobacter benzoatilyticus
Pathway
gbz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gbz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JZM60_08730 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbz03021
]
JZM60_08730 (rpoC)
03400 DNA repair and recombination proteins [BR:
gbz03400
]
JZM60_08730 (rpoC)
Enzymes [BR:
gbz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JZM60_08730 (rpoC)
Transcription machinery [BR:
gbz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JZM60_08730 (rpoC)
DNA repair and recombination proteins [BR:
gbz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JZM60_08730 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
QSV44268
LinkDB
All DBs
Position
1862540..1866718
Genome browser
AA seq
1392 aa
AA seq
DB search
MEDFFSFFDKPKDPLHFSAIRISISSPEKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLLDISLKDLEKVLYFEAYAVTDPKNTGMAMAEVLSEDRYLKALEEHNYQFEAGM
GAAAIRDCLKALDLDQLSEQLRQEMVEATSEAKRKKTAKRLKVVDAFKESGNRPEWMILE
CIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELQAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPE
LRLHQCGLPKKMALELFKPFIYNKLEERGFVTTIKSAKKMVEKERPEVWDVLEEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQVEA
RVLMMSTNNILSPAHGKPIIVPTQDMVLGIYYMTRERHFAKGDGKVFASPEEVRIAYDAG
EIDLQARIRVRMKNVKSDEADLPAIVDTTTGRILLREVLPDMVPFSAINKVMSKKELVNL
IDICYRLAGNKETVILADRLKETGFRYSTLAGISICMNDMVIPEGKPAIIESANDEVKEI
QNQYTEGLITDGERYNKVIDIWAKATEDIAKQMLDNLSKDTILSPEGEEVKIPSFNAIHM
MADSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLNVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDAIITEPDCGALDGLTVSSLTEGGEVIEQIGDRILGRVA
LDDILDPVTGDVLVPANQEIDESLVKRIEDAGIERVKIRSVLTCQSKRGICAKCYGRDLA
RGHIVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRHAEQTSLEARTEGQIKFININ
SVVNIDGHHIVMNRNGEVAIVDETGREREKYGVVYGAKIRFSPDQVVKPGETLAEWDPYT
MPILTEVAGRIKFGDIVEGVTMEEQLDEVTGLSRKVIIESRDADKRPRIAIKAPEGDTAS
AAGTIGRYYLPVGANISVVEDSFVNAGDVIAKIPRETTKTKDITGGLPRVAELFEARKPK
DFAVISEIDGVVTFGKDAKGKRKVIVTPELGEPKEYLIPKGKHISVHENDYVRAGEPLMD
GSSNPHDILRVLGIKELAKYLVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKDVGDT
TLLIDDQLERTVFEDENERVMAKGGRPAIAEPLLLGITKASLSTESFISAASFQETTKVL
TQAAIEGKVDQLRGLKENVIMGRLIPAGTGLSRYRNLKLVAEQAEIMEPIAVVPREIDED
FPEDDNGDEFDE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
ttggaagactttttcagctttttcgataaaccgaaggacccgttgcatttctcggcgatc
cgcatttccatttcatcgccggaaaaaattcgcgagcgttcgttcggcgaggtaaaaaaa
ccagaaaccatcaactatcgtacgttcaagcctgaacgcgatggtctgttctgcgccaaa
atttttggtccgaccaaggactatgaatgcaactgcggcaaatacaagcgcatgaaacac
cgcggaattgtctgcgagaagtgcggcgtagaagtcatcccctcgaaagtgcgtcgtgag
cgcctcgggcacatcgatcttgcaactccggttgcccatatctggttcctgaagtctctg
ccgtcacgtattgggaacctgctggatatttcactgaaggatctcgagaaggttctctac
tttgaggcgtatgcggtaactgatccgaagaataccggcatggccatggcggaagttctc
tccgaggaccgttatctgaaggccctggaggagcataattaccagttcgaggctggtatg
ggtgctgctgcgattcgtgactgcctcaaggctctcgacctggatcagctttccgagcag
cttcgccaggagatggttgaagctacgagcgaggcgaaacggaagaagactgccaagcgg
ctcaaggtggtggatgcattcaaggagtccggcaaccggcccgagtggatgattctcgag
tgcattccggttctgcctcctgaacttcgtcccctcgtacccctggatggcggacgcttc
gcgacgagtgacctcaacgacctctaccgtcgcgtcattaaccggaataaccggctcaag
cgcctcatggagcttcaagcccccgaggttatcattcgcaacgagaagcggatgcttcag
gaagccgttgacgctctttttgacaacggtcgccgcggccgtgccattgccgggcccaac
aagcgccccctgaaatcgctgtccgatatgctcaaggggaagtccggccgtttccgccag
aacctcctcggcaagcgggtcgactactccggccgttccgttatcgtcgtaggcccggag
cttcgtctccatcagtgcggcctccccaagaaaatggcgctcgaactcttcaagccgttt
atttacaacaagcttgaggaacgtggtttcgttactacaataaaaagtgccaagaagatg
gtcgagaaggaacggcccgaggtatgggacgttcttgaagaggttattaaagagcacccg
gtcatgttgaaccgtgctccgaccctgcaccgtcttggcatccaggcttttgagccggta
ttgatcgaagggaaagcaattcagcttcaccctctcgtttgtactgcttttaacgccgac
tttgacggtgaccagatggcggtccacctccccctttcaatcgagagtcaggtggaagca
cgcgttctcatgatgagcaccaataacatcctgtcgcctgcccacggcaagccgatcatc
gttccgacccaggatatggttctcggtatttactacatgactcgcgagcgtcacttcgcg
aaaggggacgggaaggtatttgcatctcccgaggaagtgcgtattgcctacgatgcgggg
gagattgacctgcaggcgcgaatccgggttcgcatgaagaatgtcaagtcggacgaagcg
gatcttcctgcaatcgtcgataccacgaccggccgtatcctgctgcgcgaagttcttccc
gatatggttcccttctcagccatcaacaaggttatgagcaagaaggaactcgtgaacctt
atcgatatctgctaccgtctcgccggcaacaaggagacggttatccttgcagaccgcttg
aaagagaccggcttccggtactccaccctggccggtatctccatctgcatgaatgacatg
gtgattcccgaagggaaaccggcgattatcgaaagcgccaacgacgaggtcaaggagatc
cagaatcagtacacagagggtctcattaccgacggcgaacgttacaacaaggtaatcgac
atctgggccaaggccactgaagacatcgccaagcagatgctcgacaacctttcaaaggat
acgattctttctccagaaggggaagaagttaagattccgtccttcaatgccattcacatg
atggcggattccggtgcgcggggctccgcccagcagatccgccagttggccggtatgcgc
ggactcatggccaagccgtccggcgaaattattgaaacccctattacggcgaacttccgc
gaaggtctgaatgttctccagtacttcatttcaacgcacggtgcccggaaaggtctcgcg
gataccgcgctcaagacggcaaactccgggtacctcacacgccgattggttgacgttgcc
caggacgcaattattacggaaccggattgcggtgctcttgacggactcaccgtttcttct
ctgactgaaggcggagaagtcatagagcagatcggtgaccgtattcttggccgtgttgcg
ctcgatgacatccttgaccctgttaccggcgacgtgcttgtcccggctaaccaggaaatt
gacgaatctctcgtcaagcgcattgaagacgccggcatcgaacgggttaaaatccgttcc
gttctcacctgccagagcaagcgcggtatatgcgcaaaatgctatggccgtgacctggct
cggggtcatatcgtcaatatgggtgaggcggttggcgtcattgccgcccagtccatcggc
gaacctggtacacagctcacaatgcgtactttccacatcggtggtacggcatcacggcat
gcagagcagacctcgctggaagccaggaccgaagggcaaatcaagttcatcaatatcaac
agcgttgtcaatattgacgggcaccacatcgtcatgaaccgcaacggcgaagtcgccatt
gttgatgagaccggccgtgaacgggaaaaatatggtgtagtttacggtgcaaaaataaga
ttcagcccggatcaagtggttaagcccggcgagacattggccgagtgggacccgtacacg
atgccgatcctgactgaagttgcgggtcgcattaaattcggcgatatcgtcgaaggcgtt
acaatggaagagcagctcgatgaagttaccgggctttcccggaaagtcatcatcgagtcg
agggatgccgacaagcgtccacgcatagccataaaggcccccgagggagacactgcttcg
gctgccggaactatcggccgctactacttgccggtaggtgccaatatttcggtggtagaa
gactcgtttgtcaatgccggcgatgttattgcgaaaataccgcgagaaaccacgaaaacc
aaggatatcaccggtggtctgccgcgggttgccgagctcttcgaggcgcgcaaaccgaag
gattttgcggtcatatccgaaatcgacggcgttgtaacctttggcaaggacgccaaaggc
aagcgcaaggtcatagttactccggaacttggtgaacctaaagaatatcttatccccaag
ggcaagcatatcagcgttcatgaaaatgattacgtgcgggcgggtgagccgctcatggat
ggttcgtccaacccccacgatatcctgcgggtgctgggtataaaagaacttgccaaatat
cttgtggacgaggttcaggaggtttaccgcctgcaaggggtaaaaatcaacgacaagcac
attgaggtcattgtgcgtcagatgctgcggcgggtccgaatcaaagatgtgggcgatacc
accctgctcatcgacgaccagcttgaaagaacggtttttgaagacgaaaacgagcgtgtc
atggcaaagggtggtcgccctgctatcgccgagccgcttcttcttggtattaccaaggcg
tctctttccacggagtctttcatctctgcggcatccttccaggagacgacgaaggtgctg
acccaggctgcaatcgaagggaaagtcgatcagctcaggggccttaaagagaacgtaata
atggggcgtctgattccggcaggtacaggattgtcccgctatcgcaacctgaagcttgtg
gcagaacaagcggagattatggagccgattgccgtcgttcctcgtgaaatagatgaagat
tttcccgaagatgacaatggtgatgaattcgatgaataa
DBGET
integrated database retrieval system
