KEGG   Geobacter benzoatilyticus: JZM60_09655
Entry
JZM60_09655       CDS       T07995                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
gbz  Geobacter benzoatilyticus
Pathway
gbz00010  Glycolysis / Gluconeogenesis
gbz00020  Citrate cycle (TCA cycle)
gbz00260  Glycine, serine and threonine metabolism
gbz00280  Valine, leucine and isoleucine degradation
gbz00310  Lysine degradation
gbz00380  Tryptophan metabolism
gbz00620  Pyruvate metabolism
gbz00630  Glyoxylate and dicarboxylate metabolism
gbz00640  Propanoate metabolism
gbz00670  One carbon pool by folate
gbz00785  Lipoic acid metabolism
gbz01100  Metabolic pathways
gbz01110  Biosynthesis of secondary metabolites
gbz01120  Microbial metabolism in diverse environments
gbz01200  Carbon metabolism
gbz01210  2-Oxocarboxylic acid metabolism
gbz01240  Biosynthesis of cofactors
Module
gbz_M00009  Citrate cycle (TCA cycle, Krebs cycle)
gbz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
gbz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
gbz_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:gbz00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    JZM60_09655 (lpdA)
   00020 Citrate cycle (TCA cycle)
    JZM60_09655 (lpdA)
   00620 Pyruvate metabolism
    JZM60_09655 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    JZM60_09655 (lpdA)
   00640 Propanoate metabolism
    JZM60_09655 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    JZM60_09655 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    JZM60_09655 (lpdA)
   00310 Lysine degradation
    JZM60_09655 (lpdA)
   00380 Tryptophan metabolism
    JZM60_09655 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    JZM60_09655 (lpdA)
   00670 One carbon pool by folate
    JZM60_09655 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:gbz04147]
    JZM60_09655 (lpdA)
Enzymes [BR:gbz01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     JZM60_09655 (lpdA)
Exosome [BR:gbz04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   JZM60_09655 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox HI0933_like FAD_oxidored Pyr_redox_3 FAD_binding_2 GIDA NAD_binding_8 FAD_binding_3 DAO AlaDh_PNT_C XdhC_C Thi4 3HCDH_N UDPG_MGDP_dh_N Amino_oxidase
Other DBs
NCBI-ProteinID: QSV44441
LinkDB
Position
2040965..2042374
AA seq 469 aa
MAEQIYDLIVIGAGPGGYVAAIRAAQLGLAVAVVEKRETLGGVCLNEGCIPSKALLDSSE
LFAQARDKFAGHGIAIDPPRLDLPRMMARKDEVVKKLTDGVAFLLKKNKIARVQGTARLT
GERDGAHGVEVTTPEGPQQLRGKRVLLATGSEAAAIPSIPFDGETVVSAREALCFDRVPE
HLLVVGAGYIGLELGSVWLRLGSRVTVVEVLPKMLPNTDGQVADTLMRSLKKQGIAFRME
TKVTGFAKGDGKAVVTVEAGDAKEEIVCDKVLVAAGRRPVTAGLGLEELGVGLEGGRIKV
DDNYQSSVRGIYAIGDLIPGPMLAHKAMVEGEVFAERLAGQASVVDYGFIPGIVYTWPEA
AGVGGTEEQLKADGVEYRVGKSPFMANGRAKCMDETEGFVKILATPDSGRVLGIHVIGPR
ASDLIAEAVTVMTYGGSAADIAMTFHAHPTLSEAMKEAALDVEKRAIHA
NT seq 1410 nt   +upstreamnt  +downstreamnt
atggcagaacagatttacgacctcatcgtcattggcgccggccccggcggctacgtggcc
gccatccgtgcggcccagctcggcctggccgtggcggtggtggagaagcgggagactctc
ggcggggtctgtctcaacgaagggtgcattcccagtaaggcgctcctggactcctcggag
ctcttcgcccaggcccgggacaagttcgccggccacggcatcgccatcgacccgccgcgg
cttgacctcccccggatgatggcccgcaaggacgaggtggtgaagaagctgaccgacggg
gtcgccttcctcctcaagaaaaacaaaatcgcccgggttcaggggacggcccggctcacc
ggcgagcgggacggcgcccatggggtcgaagtgacgacgccggaggggccgcagcagctc
cgggggaaacgggtgctcctggccacggggagcgaggcggcggctatcccctccatcccc
tttgacggcgagacggtggtgagcgcccgggaggccctttgcttcgaccgggtgccggaa
cacctcctggtggtgggggcggggtacatcgggctggagctggggtcggtctggctgcgg
ctcgggagccgggtaacggtggtggaggtgcttcccaagatgctccccaataccgacggc
caggtggccgatacgctcatgcgctccctgaaaaagcagggaatcgccttccggatggaa
acgaaggttaccgggtttgccaaaggggacggcaaggcggtggttaccgtggaggcgggc
gatgccaaggaggaaatcgtctgtgacaaggtgctggtggcggcgggacggcgccccgtt
acggccgggctcggcctggaggaactgggcgtggggttggaaggggggcggatcaaggtg
gatgacaactaccagtcctccgtgcggggcatttacgccatcggcgacctgatccccggc
cccatgctggcccacaaggccatggttgaaggggaggtctttgccgagcggctcgcgggg
caggcttcggtggtggactatggcttcatccctggtatcgtctatacatggcccgaagcg
gccggagtgggtgggaccgaggaacagctcaaggccgacggggtcgagtaccgcgtcggc
aagtcccccttcatggccaacggccgggccaagtgcatggacgagaccgaagggttcgtg
aagatcctcgccacacccgacagcggccgggtcctgggcatccacgtcatcgggccacgg
gcatcggacctgattgccgaggcggtgacggtgatgacctacggcggcagcgccgccgat
atcgccatgaccttccatgcccatcctaccctgtctgaagccatgaaggaagcggccctg
gacgtggagaagcgggcgatacacgcgtaa

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