Geobacter benzoatilyticus: JZM60_13050
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Entry
JZM60_13050 CDS
T07995
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gbz
Geobacter benzoatilyticus
Brite
KEGG Orthology (KO) [BR:
gbz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gbz03009
]
JZM60_13050 (rlmD)
Enzymes [BR:
gbz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JZM60_13050 (rlmD)
Ribosome biogenesis [BR:
gbz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JZM60_13050 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
MTS
Methyltransf_25
TRM5-TYW2_MTfase
Cons_hypoth95
PrmA
Methyltransf_4
Methyltransf_11
DOT1
Motif
Other DBs
NCBI-ProteinID:
QSV45068
LinkDB
All DBs
Position
complement(2832398..2833903)
Genome browser
AA seq
501 aa
AA seq
DB search
MAIKNRHSDSKKKNQDNTANRILRTGQLVTLEITGLDDEGFGTASFEGKKVLIAGALPGE
TVSFKVTHCGARTAFGETVTILSPSPYRMASSQCTIAACSNCPLISMNYQAQLDLKHRCI
EREIRTFPSLRAVPVHDVIPSPRPLNYRNSAKLVVAGTFRSPIIGIYRRNSHDVADIASC
PLHHPLINRIVDVVKEGITKGKVPVYNPRTGTGFLRYLVVRVSEHSGRAMVVFVTARRSY
NEIHHLAKYIQRLVPELDVAVQNVNASEGNVVLGQQDHFITRDHALIDELGDVRFSISPR
SFFQVNSGSARIIYEKVREWSALTGQEMVVDLYCGIGGISLFLAGQAREVHGIEYVDAAV
ADAERNARLNRVHNCSFEAGDAAELLRDHIEDGAEPDLIVLNPPRKGCDRKVLETAAASG
PGRIIYVSCSPATLARDLDILAGLGYRTLEIQPVDMFPQTPHVENVALLVDARSEINNQA
PSMTGSSRKQLQQRKKKGVSA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcaaaaacaggcactcagacagcaagaaaaagaatcaggacaacacagctaat
cgaatactgcgcacagggcagctcgtgacgctcgaaattaccggtctggatgatgaagga
ttcggtacggcatccttcgaaggaaagaaggttctcattgccggggctctacccggtgaa
accgtaagtttcaaggtaacccactgcggggcgcggacggcattcggcgaaaccgtcaca
atcctgtctccctccccataccgcatggcatcctcgcagtgcaccattgccgcctgcagc
aactgtccgcttatttccatgaactaccaggcgcagcttgacctgaaacatcgttgcatc
gaaagggaaatccgtaccttcccgtcgcttcgcgcagttccggtacacgacgtgattccg
tcgcctcgcccccttaactaccgcaactccgccaaacttgtggtggccggcaccttcagg
tcgccgatcatcggaatataccggcgcaacagccacgacgttgccgacattgcctcctgc
ccgctccaccatcccctcataaaccggatcgttgacgtcgtgaaagaagggatcaccaag
gggaaagttccggtctacaatccccggaccggcaccggtttcctgcgctacctggtggta
cgggtttccgagcattccggccgggcaatggttgttttcgtcactgcaagaaggagttac
aacgagattcatcatctggccaaatacattcagcggcttgtgccggaactggatgtggcg
gtccagaacgtgaacgcctcggaagggaatgtggttcttggccagcaggaccatttcata
accagggatcatgcccttattgacgaacttggcgatgtgcgattttccatctctccccgc
tccttcttccaggtgaacagcggcagtgcccgcatcatctatgaaaaggtccgggagtgg
agtgccctgaccggtcaggagatggtggtcgatctctattgcggcattggcgggatatcg
ctctttcttgcaggccaagcacgggaggtacatggcatagagtacgtggatgccgccgtg
gccgacgcggagcgtaatgccaggctgaaccgtgtccacaactgctccttcgaagcaggt
gatgccgccgagttgctgcgggatcatattgaagacggtgcggagcccgatcttatagta
ttgaaccctccccgcaaagggtgcgatcgcaaggtactggaaacggcggcagcctcagga
ccgggcagaattatctatgtctcctgctctccggcaacccttgcccgtgatctggatatc
ctggctggtctcggctatcggaccctggagattcaaccggttgacatgttcccccagacc
ccacacgttgaaaacgttgccctccttgtggatgcgcgcagcgaaatcaacaatcaggct
ccctccatgaccggaagcagccggaaacagctgcaacaacgcaaaaagaaaggggtgtcc
gcctga
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